Transcript: Human XM_017024678.1

PREDICTED: Homo sapiens myosin heavy chain 10 (MYH10), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MYH10 (4628)
Length:
7729
CDS:
177..6137

Additional Resources:

NCBI RefSeq record:
XM_017024678.1
NBCI Gene record:
MYH10 (4628)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017024678.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000123075 GCTCGGATGAAGCAGCTTAAA pLKO.1 5835 CDS 100% 13.200 18.480 N MYH10 n/a
2 TRCN0000299024 GCTCGGATGAAGCAGCTTAAA pLKO_005 5835 CDS 100% 13.200 18.480 N MYH10 n/a
3 TRCN0000123074 CGGGATTCCTTCCTGAAAGAT pLKO.1 6225 3UTR 100% 5.625 3.938 N MYH10 n/a
4 TRCN0000299025 CGGGATTCCTTCCTGAAAGAT pLKO_005 6225 3UTR 100% 5.625 3.938 N MYH10 n/a
5 TRCN0000123078 GCAGCTAGTCTTGAGTCTCAA pLKO.1 4134 CDS 100% 4.950 3.465 N MYH10 n/a
6 TRCN0000299095 GCAGCTAGTCTTGAGTCTCAA pLKO_005 4134 CDS 100% 4.950 3.465 N MYH10 n/a
7 TRCN0000123076 GCCAACATTGAAACATACCTT pLKO.1 981 CDS 100% 3.000 2.100 N MYH10 n/a
8 TRCN0000299094 GCCAACATTGAAACATACCTT pLKO_005 981 CDS 100% 3.000 2.100 N MYH10 n/a
9 TRCN0000123077 GCACATATTCAGGACCTGGAA pLKO.1 3054 CDS 100% 2.640 1.848 N MYH10 n/a
10 TRCN0000299027 GCACATATTCAGGACCTGGAA pLKO_005 3054 CDS 100% 2.640 1.848 N MYH10 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017024678.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.