Transcript: Human XM_017026832.1

PREDICTED: Homo sapiens heterogeneous nuclear ribonucleoprotein M (HNRNPM), transcript variant X15, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
HNRNPM (4670)
Length:
2286
CDS:
665..2026

Additional Resources:

NCBI RefSeq record:
XM_017026832.1
NBCI Gene record:
HNRNPM (4670)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017026832.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000350395 CGAATTGATAGAAACGCTTAA pLKO_005 2006 CDS 100% 10.800 15.120 N HNRNPM n/a
2 TRCN0000001244 ACAAGCATAGTCTGAGCGGAA pLKO.1 134 5UTR 100% 2.160 1.728 N HNRNPM n/a
3 TRCN0000314685 ACAAGCATAGTCTGAGCGGAA pLKO_005 134 5UTR 100% 2.160 1.728 N HNRNPM n/a
4 TRCN0000123824 GCTGGATGTATAAAGATGTTT pLKO.1 2102 3UTR 100% 5.625 3.938 N Hnrnpm n/a
5 TRCN0000351872 GCTGGATGTATAAAGATGTTT pLKO_005 2102 3UTR 100% 5.625 3.938 N Hnrnpm n/a
6 TRCN0000001245 GAGAGGAGAGATCATTGCAAA pLKO.1 976 CDS 100% 4.950 2.970 N HNRNPM n/a
7 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 580 5UTR 100% 4.950 2.475 Y ERAP2 n/a
8 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 581 5UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017026832.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.