Transcript: Human XM_017028431.2

PREDICTED: Homo sapiens intersectin 1 (ITSN1), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ITSN1 (6453)
Length:
16852
CDS:
294..5291

Additional Resources:

NCBI RefSeq record:
XM_017028431.2
NBCI Gene record:
ITSN1 (6453)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017028431.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000233548 GATACTCAATGACCAATTAAA pLKO_005 1931 CDS 100% 15.000 21.000 N ITSN1 n/a
2 TRCN0000002009 GCACTAGCTGACATGAATAAT pLKO.1 480 CDS 100% 15.000 21.000 N ITSN1 n/a
3 TRCN0000233549 CTAACTATGTGAGGCTTAAAG pLKO_005 3448 CDS 100% 13.200 18.480 N ITSN1 n/a
4 TRCN0000328084 CTAACTATGTGAGGCTTAAAG pLKO_005 3448 CDS 100% 13.200 18.480 N Itsn1 n/a
5 TRCN0000379492 GATCAGCAGTTCCATAGTTTA pLKO_005 369 CDS 100% 13.200 18.480 N ITSN1 n/a
6 TRCN0000381212 GCAATGGATCCTCGGTGTAAA pLKO_005 4374 CDS 100% 13.200 18.480 N ITSN1 n/a
7 TRCN0000380271 TAGACTTCTTGGCCTACAATG pLKO_005 5710 3UTR 100% 10.800 15.120 N ITSN1 n/a
8 TRCN0000380413 GGCTTCTAGGGTCGCTGAAAT pLKO_005 5534 3UTR 100% 13.200 10.560 N ITSN1 n/a
9 TRCN0000002008 GCACGAATGAGAAACCAGAAA pLKO.1 2872 CDS 100% 4.950 3.960 N ITSN1 n/a
10 TRCN0000379689 ACTGAAATACAGGCAATTATT pLKO_005 959 CDS 100% 15.000 10.500 N ITSN1 n/a
11 TRCN0000379756 AGATACCCACTGATCATTAAA pLKO_005 4443 CDS 100% 15.000 10.500 N ITSN1 n/a
12 TRCN0000233550 GATGGGTCTGGTTACTATAAA pLKO_005 5610 3UTR 100% 15.000 10.500 N ITSN1 n/a
13 TRCN0000382087 GGAGACATAGTCATGGTTAAA pLKO_005 2583 CDS 100% 13.200 9.240 N ITSN1 n/a
14 TRCN0000381219 TACAAGCTCAAGCCCTATATC pLKO_005 3040 CDS 100% 13.200 9.240 N ITSN1 n/a
15 TRCN0000233547 TCGAAGGCAAGAACTACTAAA pLKO_005 1649 CDS 100% 13.200 9.240 N ITSN1 n/a
16 TRCN0000233546 TCGATCTGGCAGTGGTATATC pLKO_005 1226 CDS 100% 13.200 9.240 N ITSN1 n/a
17 TRCN0000002007 CGAGCATCAGAGACCAAGAAA pLKO.1 2297 CDS 100% 5.625 3.938 N ITSN1 n/a
18 TRCN0000010675 GCTGTTTGGTTTGAGTTCTTT pLKO.1 6493 3UTR 100% 5.625 3.938 N ITSN1 n/a
19 TRCN0000002010 GCAGTTGTTTGATGAGCCGTA pLKO.1 5270 CDS 100% 2.160 1.512 N ITSN1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017028431.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.