Transcript: Human XM_017029246.1

PREDICTED: Homo sapiens CHM Rab escort protein (CHM), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CHM (1121)
Length:
5196
CDS:
444..1961

Additional Resources:

NCBI RefSeq record:
XM_017029246.1
NBCI Gene record:
CHM (1121)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017029246.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000245183 GATTTACCATCCAACGTTTAT pLKO_005 1698 CDS 100% 13.200 18.480 N CHM n/a
2 TRCN0000065182 GATCGTAATAGGGACGGGTTT pLKO.1 36 5UTR 100% 4.050 5.670 N CHM n/a
3 TRCN0000065179 CGGTATGGCAACACTCCATTT pLKO.1 1098 CDS 100% 10.800 8.640 N CHM n/a
4 TRCN0000245184 GCCTACGTTTCTCCATATATA pLKO_005 2769 3UTR 100% 15.000 10.500 N CHM n/a
5 TRCN0000245182 ATGCATGAAAGGCACCTATTT pLKO_005 1493 CDS 100% 13.200 9.240 N CHM n/a
6 TRCN0000245180 CCTACGGAGGATGAGTCATTA pLKO_005 417 5UTR 100% 13.200 9.240 N CHM n/a
7 TRCN0000065181 CCAGAGAATGCGCTAGAAGTA pLKO.1 486 CDS 100% 4.950 3.465 N CHM n/a
8 TRCN0000065180 CCATATACTGAAATGGAGATA pLKO.1 1587 CDS 100% 4.950 3.465 N CHM n/a
9 TRCN0000065178 GCCCAGATTGTGGTTTAGGAA pLKO.1 1729 CDS 100% 3.000 2.100 N CHM n/a
10 TRCN0000245181 GGATATGAAGAGATCACATTT pLKO_005 939 CDS 100% 13.200 7.920 N CHM n/a
11 TRCN0000140719 GATCACTTGAGGTCAGGAGTT pLKO.1 3257 3UTR 100% 4.050 2.025 Y P3H4 n/a
12 TRCN0000165299 GATCACTTGAGGTCAGGAGTT pLKO.1 3257 3UTR 100% 4.050 2.025 Y ORAI2 n/a
13 TRCN0000352971 GATCACTTGAGGTCAGGAGTT pLKO_005 3257 3UTR 100% 4.050 2.025 Y P3H4 n/a
14 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 3219 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017029246.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.