Transcript: Human XM_017029384.1

PREDICTED: Homo sapiens bromodomain and WD repeat domain containing 3 (BRWD3), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
BRWD3 (254065)
Length:
5425
CDS:
1006..5202

Additional Resources:

NCBI RefSeq record:
XM_017029384.1
NBCI Gene record:
BRWD3 (254065)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017029384.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000378280 GTAGTCGCTTTGGTCATATTT pLKO_005 133 5UTR 100% 15.000 21.000 N BRWD3 n/a
2 TRCN0000226212 TGATAGATTCCGCAGTATAAT pLKO_005 2946 CDS 100% 15.000 21.000 N Brwd3 n/a
3 TRCN0000359014 TGATAGATTCCGCAGTATAAT pLKO_005 2946 CDS 100% 15.000 21.000 N BRWD3 n/a
4 TRCN0000364192 TCGAAGACATAGTAGTCAAAT pLKO_005 1887 CDS 100% 13.200 18.480 N BRWD3 n/a
5 TRCN0000160865 GCACGTATTGCAGATGATGAA pLKO.1 4969 CDS 100% 4.950 6.930 N BRWD3 n/a
6 TRCN0000432687 ACAAGACCTGAGACTAATTAA pLKO_005 1764 CDS 100% 15.000 10.500 N BRWD3 n/a
7 TRCN0000418715 TCAAATAAGCCTTACTCATTA pLKO_005 5379 3UTR 100% 13.200 9.240 N BRWD3 n/a
8 TRCN0000161252 GCAGGGAATTTACCAGGAAAT pLKO.1 5250 3UTR 100% 10.800 7.560 N BRWD3 n/a
9 TRCN0000136866 CCCAGGGAAAGCCAAATCATT pLKO.1 4398 CDS 100% 5.625 3.938 N BRWD3 n/a
10 TRCN0000159686 GCCAGTATACATTTGTTTCAA pLKO.1 5331 3UTR 100% 5.625 3.938 N BRWD3 n/a
11 TRCN0000159299 GACAACAAGATTCATCTCTTT pLKO.1 3848 CDS 100% 4.950 3.465 N BRWD3 n/a
12 TRCN0000159352 GCAACAAGAATGGAAGAGTAT pLKO.1 975 5UTR 100% 4.950 3.465 N BRWD3 n/a
13 TRCN0000136128 GAAAGCAACATGGCAATGGAA pLKO.1 4757 CDS 100% 3.000 2.100 N BRWD3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017029384.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.