Transcript: Mouse XM_017312329.1

PREDICTED: Mus musculus lines homolog 1 (Lins1), transcript variant X7, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Lins1 (72635)
Length:
2973
CDS:
559..2055

Additional Resources:

NCBI RefSeq record:
XM_017312329.1
NBCI Gene record:
Lins1 (72635)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017312329.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000246827 CCGAGCTACTGGCCTTCTTAA pLKO_005 1052 CDS 100% 13.200 18.480 N Lins1 n/a
2 TRCN0000257551 GAAACCACAAGTGAGCATTTA pLKO_005 1717 CDS 100% 13.200 18.480 N Lins1 n/a
3 TRCN0000190322 CCACAAGTGAGCATTTAGCAA pLKO.1 1721 CDS 100% 3.000 4.200 N Lins1 n/a
4 TRCN0000246824 ACCGCAGAGTCTGGTAGATTA pLKO_005 1671 CDS 100% 13.200 10.560 N Lins1 n/a
5 TRCN0000246826 CCTGAGAGCAGCAAGCTTAAT pLKO_005 951 CDS 100% 13.200 9.240 N Lins1 n/a
6 TRCN0000246825 GAGACCTGTTTCCTTGAATAT pLKO_005 1357 CDS 100% 13.200 9.240 N Lins1 n/a
7 TRCN0000216814 GATATTCTTGCCTGGCCTATT pLKO.1 661 CDS 100% 10.800 7.560 N Lins1 n/a
8 TRCN0000217333 GACAGTGACATGCTCACTTTA pLKO.1 799 CDS 100% 1.320 0.924 N Lins1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017312329.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.