Transcript: Mouse XM_017313160.1

PREDICTED: Mus musculus matrix metallopeptidase 12 (Mmp12), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Mmp12 (17381)
Length:
1780
CDS:
93..1424

Additional Resources:

NCBI RefSeq record:
XM_017313160.1
NBCI Gene record:
Mmp12 (17381)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017313160.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000054696 GCAGCATTCCAATAATCCAAA pLKO.1 692 CDS 100% 4.950 6.930 N Mmp12 n/a
2 TRCN0000031255 CCCATGAATGACAGTGAATTT pLKO.1 90 5UTR 100% 13.200 9.240 N Mmp12 n/a
3 TRCN0000031256 CCTCACTTACAGGATCTATAA pLKO.1 353 CDS 100% 13.200 9.240 N Mmp12 n/a
4 TRCN0000054697 GAATGGTACTTGTCAAGATTT pLKO.1 114 CDS 100% 13.200 9.240 N Mmp12 n/a
5 TRCN0000031254 GCCACCAACATTACTTCTATT pLKO.1 957 CDS 100% 13.200 9.240 N Mmp12 n/a
6 TRCN0000054694 CAAGCTGATTTCCACACACTT pLKO.1 1259 CDS 100% 4.950 3.465 N Mmp12 n/a
7 TRCN0000031258 GATAAACACTACTGGAGGTAT pLKO.1 1203 CDS 100% 4.950 3.465 N Mmp12 n/a
8 TRCN0000054693 CTTACGAAATTGAAAGCAGAA pLKO.1 1018 CDS 100% 4.050 2.835 N Mmp12 n/a
9 TRCN0000054695 GCTCACGGAGACTTCAACTAT pLKO.1 513 CDS 100% 5.625 3.375 N Mmp12 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017313160.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.