Transcript: Mouse XM_017313595.1

PREDICTED: Mus musculus CASP8 and FADD-like apoptosis regulator (Cflar), transcript variant X7, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cflar (12633)
Length:
6909
CDS:
1060..1947

Additional Resources:

NCBI RefSeq record:
XM_017313595.1
NBCI Gene record:
Cflar (12633)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017313595.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000031004 CCAAGGAGCAAGATCAAATAT pLKO.1 1041 5UTR 100% 15.000 10.500 N Cflar n/a
2 TRCN0000301283 CCAAGGAGCAAGATCAAATAT pLKO_005 1041 5UTR 100% 15.000 10.500 N Cflar n/a
3 TRCN0000031008 CCTCACCTGGTTTCTGATTAT pLKO.1 881 5UTR 100% 13.200 9.240 N Cflar n/a
4 TRCN0000331487 CCTCACCTGGTTTCTGATTAT pLKO_005 881 5UTR 100% 13.200 9.240 N Cflar n/a
5 TRCN0000031006 CGAGAAGGAGATGATGCTCTT pLKO.1 670 5UTR 100% 4.050 2.835 N Cflar n/a
6 TRCN0000331424 CGAGAAGGAGATGATGCTCTT pLKO_005 670 5UTR 100% 4.050 2.835 N Cflar n/a
7 TRCN0000031005 CCTTCTCAAGAGGATCTTGAA pLKO.1 820 5UTR 100% 0.495 0.347 N Cflar n/a
8 TRCN0000301284 CCTTCTCAAGAGGATCTTGAA pLKO_005 820 5UTR 100% 0.495 0.347 N Cflar n/a
9 TRCN0000031007 GCCTGAAGAACATCCACAGAA pLKO.1 980 5UTR 100% 4.950 2.970 N Cflar n/a
10 TRCN0000301211 GCCTGAAGAACATCCACAGAA pLKO_005 980 5UTR 100% 4.950 2.970 N Cflar n/a
11 TRCN0000182745 CCAGAGTTCAAATCCCAGCAA pLKO.1 5228 3UTR 100% 2.640 1.320 Y P3h3 n/a
12 TRCN0000320070 CCAGAGTTCAAATCCCAGCAA pLKO_005 5228 3UTR 100% 2.640 1.320 Y P3h3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017313595.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.