Transcript: Mouse XM_017314044.1

PREDICTED: Mus musculus spectrin repeat containing, nuclear envelope 1 (Syne1), transcript variant X6, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Syne1 (64009)
Length:
28351
CDS:
160..26547

Additional Resources:

NCBI RefSeq record:
XM_017314044.1
NBCI Gene record:
Syne1 (64009)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017314044.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000239248 GGAAACAAGTGGAGCATATAA pLKO_005 1187 CDS 100% 15.000 21.000 N Syne1 n/a
2 TRCN0000108879 CGGCTCTTCGATTGGCATATA pLKO.1 1285 CDS 100% 13.200 18.480 N Syne1 n/a
3 TRCN0000239244 TACAGAGGATCACCGATTAAA pLKO_005 448 CDS 100% 15.000 10.500 N Syne1 n/a
4 TRCN0000239245 ACATTAATGCTACTGATATTG pLKO_005 476 CDS 100% 13.200 9.240 N Syne1 n/a
5 TRCN0000239246 ACATTGGCACCGCACTCAAAT pLKO_005 404 CDS 100% 13.200 9.240 N Syne1 n/a
6 TRCN0000108876 GCCGGGAATTTCCTGATTGAA pLKO.1 2089 CDS 100% 5.625 3.938 N Syne1 n/a
7 TRCN0000108878 GCAGGACAAATATCAGGCATT pLKO.1 1134 CDS 100% 4.050 2.835 N Syne1 n/a
8 TRCN0000108877 GCGCCTTATCATTTGCTCCAT pLKO.1 3145 CDS 100% 2.640 1.848 N Syne1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017314044.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.