Transcript: Mouse XM_017314073.1

PREDICTED: Mus musculus TGF-beta activated kinase 1/MAP3K7 binding protein 2 (Tab2), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tab2 (68652)
Length:
4528
CDS:
749..2830

Additional Resources:

NCBI RefSeq record:
XM_017314073.1
NBCI Gene record:
Tab2 (68652)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017314073.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000313292 CTAATGATACCTCAATCTAAT pLKO_005 2978 3UTR 100% 13.200 18.480 N Tab2 n/a
2 TRCN0000313294 GGCGCCTGAAGAGATCAAATT pLKO_005 2472 CDS 100% 13.200 18.480 N Tab2 n/a
3 TRCN0000004452 AGATTGACATTGACTGCTTAA pLKO.1 2556 CDS 100% 10.800 15.120 N TAB2 n/a
4 TRCN0000352616 AGATTGACATTGACTGCTTAA pLKO_005 2556 CDS 100% 10.800 15.120 N TAB2 n/a
5 TRCN0000088614 CCTCGAAAGAACCAGATAGAA pLKO.1 1709 CDS 100% 5.625 7.875 N Tab2 n/a
6 TRCN0000349501 CCTCGAAAGAACCAGATAGAA pLKO_005 1709 CDS 100% 5.625 7.875 N Tab2 n/a
7 TRCN0000088615 GCAGTCCAATAACGAACTGTT pLKO.1 1093 CDS 100% 4.950 6.930 N Tab2 n/a
8 TRCN0000088613 GCCAGCATTTAGGTGTGAGAT pLKO.1 3326 3UTR 100% 4.950 6.930 N Tab2 n/a
9 TRCN0000313356 AGTCAACCCAAGGTCTATATT pLKO_005 1895 CDS 100% 15.000 12.000 N Tab2 n/a
10 TRCN0000313295 TTCTGCCCATAGCCAATATAA pLKO_005 1666 CDS 100% 15.000 10.500 N Tab2 n/a
11 TRCN0000378661 TTCTGCCCATAGCCAATATAA pLKO_005 1666 CDS 100% 15.000 10.500 N TAB2 n/a
12 TRCN0000088617 GCAGCAGTTGAGAAGTTGTAA pLKO.1 2524 CDS 100% 5.625 3.938 N Tab2 n/a
13 TRCN0000088616 GCCTGTACGTTTCTGAATCAT pLKO.1 2762 CDS 100% 5.625 3.938 N Tab2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017314073.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.