Transcript: Mouse XM_017314788.1

PREDICTED: Mus musculus phospholipase C, delta 3 (Plcd3), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Plcd3 (72469)
Length:
3123
CDS:
100..1518

Additional Resources:

NCBI RefSeq record:
XM_017314788.1
NBCI Gene record:
Plcd3 (72469)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017314788.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000097073 GAGGCTTATATTAGGGCCTTT pLKO.1 250 CDS 100% 4.050 5.670 N Plcd3 n/a
2 TRCN0000053686 GCGGATGAACTCAGCCAACTA pLKO.1 918 CDS 100% 4.950 3.960 N PLCD3 n/a
3 TRCN0000097072 GCTTCCTCATAAACGGGCAAT pLKO.1 1028 CDS 100% 4.050 3.240 N Plcd3 n/a
4 TRCN0000443284 CTCTGGCAATCCAGGTGTTAA pLKO_005 1130 CDS 100% 13.200 9.240 N Plcd3 n/a
5 TRCN0000444394 GGTTTGTGGTAGAAGATTATG pLKO_005 1346 CDS 100% 13.200 9.240 N Plcd3 n/a
6 TRCN0000097071 CCAGCAGCTTATCCAGACTTA pLKO.1 122 CDS 100% 4.950 3.465 N Plcd3 n/a
7 TRCN0000097069 CGTAACCTTCATCCCTGAGAA pLKO.1 1819 3UTR 100% 4.950 3.465 N Plcd3 n/a
8 TRCN0000443042 AGATTCCCTGGTCAACTTGAG pLKO_005 1759 3UTR 100% 4.050 2.835 N Plcd3 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017314788.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.