Transcript: Mouse XM_017314945.1

PREDICTED: Mus musculus sodium channel, voltage-gated, type II, alpha 1 (Scn2a1), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Scn2a (110876)
Length:
8577
CDS:
413..6217

Additional Resources:

NCBI RefSeq record:
XM_017314945.1
NBCI Gene record:
Scn2a (110876)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017314945.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000267551 GCTTATCTCACTCCGTCATTA pLKO_005 4942 CDS 100% 13.200 18.480 N Scn2a n/a
2 TRCN0000255192 TTAGATCTGTTGAAGGTATAT pLKO_005 7759 3UTR 100% 13.200 18.480 N Scn2a n/a
3 TRCN0000044384 GCTGCTATTGAACAACGCATT pLKO.1 263 5UTR 100% 4.050 5.670 N SCN2A n/a
4 TRCN0000255193 ATCAAATCCCTCCGAACATTA pLKO_005 4103 CDS 100% 13.200 10.560 N Scn2a n/a
5 TRCN0000255190 TAAGAAGGTTTCGTCTATATA pLKO_005 5974 CDS 100% 15.000 10.500 N Scn2a n/a
6 TRCN0000255191 CTTGTCCTTATTTCGTCTTAT pLKO_005 1318 CDS 100% 13.200 9.240 N Scn2a n/a
7 TRCN0000173545 GCTGTTTGGAAAGAGCTACAA pLKO.1 2902 CDS 100% 4.950 2.475 Y Scn3a n/a
8 TRCN0000173685 CCAGTTCATAGAGTTCTGCAA pLKO.1 5629 CDS 100% 2.640 1.320 Y Scn9a n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017314945.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.