Transcript: Mouse XM_017315145.1

PREDICTED: Mus musculus B cell leukemia/lymphoma 11B (Bcl11b), transcript variant X9, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Bcl11b (58208)
Length:
5472
CDS:
379..2679

Additional Resources:

NCBI RefSeq record:
XM_017315145.1
NBCI Gene record:
Bcl11b (58208)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017315145.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000096234 CGGTGAACACTTGCTGACTAA pLKO.1 2625 CDS 100% 4.950 6.930 N Bcl11b n/a
2 TRCN0000414002 CATGAAGACGCACGGGCAGAT pLKO_005 2520 CDS 100% 1.350 1.890 N BCL11B n/a
3 TRCN0000096235 GCAGGAGAACATTGCAGGTAA pLKO.1 648 CDS 100% 4.950 6.435 N Bcl11b n/a
4 TRCN0000244249 TGAGAGGAGCTAAGCGCATAC pLKO_005 2667 CDS 100% 6.000 4.800 N Bcl11b n/a
5 TRCN0000096236 GTCGGAACATTCCTCTGAGAA pLKO.1 2214 CDS 100% 4.950 3.960 N Bcl11b n/a
6 TRCN0000033480 CAGGAGAACATTGCAGGTAAA pLKO.1 649 CDS 100% 10.800 7.560 N BCL11B n/a
7 TRCN0000238420 TGAGCCTTCCAGCTACATTTG pLKO_005 672 CDS 100% 10.800 7.560 N Bcl11b n/a
8 TRCN0000096238 GAGAACATTGCAGGTAAAGAT pLKO.1 652 CDS 100% 5.625 3.938 N Bcl11b n/a
9 TRCN0000238421 AGATGCCCTTCAGCGTCTACA pLKO_005 2573 CDS 100% 4.950 3.465 N Bcl11b n/a
10 TRCN0000238419 CAAGTTCCAGAGCAATCTCAT pLKO_005 1329 CDS 100% 4.950 3.465 N Bcl11b n/a
11 TRCN0000033479 CCAGCTACATTTGCACAACAT pLKO.1 680 CDS 100% 4.950 3.465 N BCL11B n/a
12 TRCN0000429728 AGTTCCAGAGCAATCTCATCG pLKO_005 1331 CDS 100% 4.050 2.835 N BCL11B n/a
13 TRCN0000441656 AGTCGAGCTTCAGCATGGACT pLKO_005 1673 CDS 100% 2.640 1.848 N BCL11B n/a
14 TRCN0000096237 CCTGATGAAGATGACCACCTA pLKO.1 598 CDS 100% 2.640 1.848 N Bcl11b n/a
15 TRCN0000436190 CCAGATGCCCTTCAGCGTCTA pLKO_005 2571 CDS 100% 1.350 0.945 N BCL11B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017315145.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.