Transcript: Mouse XM_017315680.1

PREDICTED: Mus musculus predicted gene, 19428 (Gm19428), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gm19428 (100502880)
Length:
2737
CDS:
86..1816

Additional Resources:

NCBI RefSeq record:
XM_017315680.1
NBCI Gene record:
Gm19428 (100502880)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017315680.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235273 ACTGGAGAGAAACCTTATAAA pLKO_005 377 CDS 100% 15.000 7.500 Y Gm10771 n/a
2 TRCN0000337271 ACTGGAGAGAAACCTTATAAA pLKO_005 377 CDS 100% 15.000 7.500 Y ZNF286B n/a
3 TRCN0000226019 GAGAGTAATCTTAGGATAATT pLKO_005 1809 CDS 100% 15.000 7.500 Y Gm10139 n/a
4 TRCN0000226020 ATAGTGGAGAGAAATCTTAAT pLKO_005 1886 3UTR 100% 13.200 6.600 Y Gm10139 n/a
5 TRCN0000235275 CAGTAATCTCAGATATCATAA pLKO_005 514 CDS 100% 13.200 6.600 Y Gm10771 n/a
6 TRCN0000218318 CTGTCATCTGCAACTACTTAA pLKO_005 2362 3UTR 100% 13.200 6.600 Y Gm10139 n/a
7 TRCN0000235272 TTACTTCTATAGGCTACAAAT pLKO_005 204 CDS 100% 13.200 6.600 Y Gm10771 n/a
8 TRCN0000016730 CTGGAGAGAAACCTTATGAAT pLKO.1 462 CDS 100% 5.625 2.813 Y ZNF345 n/a
9 TRCN0000095712 CCTTACTTCTATAGGCTACAA pLKO.1 202 CDS 100% 4.950 2.475 Y 2410141K09Rik n/a
10 TRCN0000226021 GAGAACCCTCATTATTGTAAT pLKO_005 2314 3UTR 100% 13.200 6.600 Y Gm10139 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017315680.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.