Transcript: Mouse XM_017316042.1

PREDICTED: Mus musculus double homeobox B-like 1 (Duxbl1), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Duxbl1 (278672)
Length:
2868
CDS:
1065..2117

Additional Resources:

NCBI RefSeq record:
XM_017316042.1
NBCI Gene record:
Duxbl1 (278672)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017316042.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000428591 ACTCCGTAGCAGTAGGTTTAA pLKO_005 2109 CDS 100% 13.200 6.600 Y Duxbl1 n/a
2 TRCN0000422102 CAAAGTTCCAGACTGATATTC pLKO_005 1369 CDS 100% 13.200 6.600 Y Duxbl1 n/a
3 TRCN0000433381 CCCAGAATCCAGGATTCATAT pLKO_005 1463 CDS 100% 13.200 6.600 Y Duxbl1 n/a
4 TRCN0000071835 CGGCATCTCTGAGTCTCAAAT pLKO.1 1217 CDS 100% 13.200 6.600 Y Duxbl1 n/a
5 TRCN0000071833 GCAGGATAAACCTAGAGTTAA pLKO.1 1319 CDS 100% 13.200 6.600 Y Duxbl1 n/a
6 TRCN0000413657 TCGGTTCCCTGGGATTGTTAC pLKO_005 1412 CDS 100% 10.800 5.400 Y Duxbl1 n/a
7 TRCN0000071837 CCGCGCTTAGAAGATTGTACT pLKO.1 1890 CDS 100% 4.950 2.475 Y Duxbl1 n/a
8 TRCN0000071834 GCTGAATGGATGCCTGACAAA pLKO.1 2004 CDS 100% 4.950 2.475 Y Duxbl1 n/a
9 TRCN0000071836 GCTTCAGTTATACTGCCTCTT pLKO.1 1623 CDS 100% 4.050 2.025 Y Duxbl1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017316042.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.