Transcript: Mouse XM_017316055.1

PREDICTED: Mus musculus fibronectin type III domain containing 3A (Fndc3a), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Fndc3a (319448)
Length:
6074
CDS:
328..3855

Additional Resources:

NCBI RefSeq record:
XM_017316055.1
NBCI Gene record:
Fndc3a (319448)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017316055.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000120551 CGGAAAGCTTTACGACCTTAA pLKO.1 1340 CDS 100% 10.800 15.120 N Fndc3a n/a
2 TRCN0000339997 CGGAAAGCTTTACGACCTTAA pLKO_005 1340 CDS 100% 10.800 15.120 N Fndc3a n/a
3 TRCN0000120549 CCCACAGGTTATCGAAGACAA pLKO.1 504 CDS 100% 4.950 6.930 N Fndc3a n/a
4 TRCN0000339925 CCCACAGGTTATCGAAGACAA pLKO_005 504 CDS 100% 4.950 6.930 N Fndc3a n/a
5 TRCN0000160817 CCAGTAAACTTCAAGCTGCTT pLKO.1 4966 3UTR 100% 2.640 2.112 N FNDC3A n/a
6 TRCN0000160207 CCTAGTGACAATGGTTCTAAA pLKO.1 1438 CDS 100% 13.200 9.240 N FNDC3A n/a
7 TRCN0000339999 GCGACATGGCAACGCAGTATA pLKO_005 689 CDS 100% 13.200 9.240 N Fndc3a n/a
8 TRCN0000120550 CCTTCAGTTAAAGGGAAGATA pLKO.1 1966 CDS 100% 5.625 3.938 N Fndc3a n/a
9 TRCN0000339998 CCTTCAGTTAAAGGGAAGATA pLKO_005 1966 CDS 100% 5.625 3.938 N Fndc3a n/a
10 TRCN0000120547 GCCGTCAGAATTTCTAATCAA pLKO.1 4894 3UTR 100% 5.625 3.938 N Fndc3a n/a
11 TRCN0000120548 CCTGCCATTGTGACTTGTCTT pLKO.1 2815 CDS 100% 4.950 3.465 N Fndc3a n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017316055.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.