Transcript: Mouse XM_017316839.1

PREDICTED: Mus musculus synaptojanin 1 (Synj1), transcript variant X19, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Synj1 (104015)
Length:
7820
CDS:
630..4874

Additional Resources:

NCBI RefSeq record:
XM_017316839.1
NBCI Gene record:
Synj1 (104015)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017316839.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000081207 CCGAACACTTAAGGACTTATA pLKO.1 1919 CDS 100% 13.200 18.480 N Synj1 n/a
2 TRCN0000081204 GAGTTTATATCATTGCGAGTT pLKO.1 1365 CDS 100% 4.050 5.670 N Synj1 n/a
3 TRCN0000081205 CCTTCCGAATGAAGAGGTTAA pLKO.1 3278 CDS 100% 10.800 8.640 N Synj1 n/a
4 TRCN0000080653 CGCTTCTAACTACTGGAAGTT pLKO.1 2554 CDS 100% 4.950 3.960 N Synj1 n/a
5 TRCN0000081203 GCCAACTGATATATTTGCAAT pLKO.1 2810 CDS 100% 4.950 3.960 N Synj1 n/a
6 TRCN0000080656 GAGGCTATTAAAGGCACATAT pLKO.1 1200 CDS 100% 13.200 9.240 N Synj1 n/a
7 TRCN0000080655 GCCTTGATTGACATAGATATA pLKO.1 3660 CDS 100% 13.200 9.240 N Synj1 n/a
8 TRCN0000081206 AGGAGTTTCAAGATAAGAGAA pLKO.1 2785 CDS 100% 4.950 3.465 N Synj1 n/a
9 TRCN0000080654 CCCATCGTGTTCGTATGTCAA pLKO.1 1858 CDS 100% 4.950 3.465 N Synj1 n/a
10 TRCN0000049969 CCGAGTTACTTCCACTGAGTT pLKO.1 1349 CDS 100% 4.950 3.465 N SYNJ1 n/a
11 TRCN0000288982 CCGAGTTACTTCCACTGAGTT pLKO_005 1349 CDS 100% 4.950 3.465 N SYNJ1 n/a
12 TRCN0000080657 GAACAAATAGTGTGCAGGCAT pLKO.1 2227 CDS 100% 2.640 1.848 N Synj1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017316839.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.