Transcript: Mouse XM_017317889.1

PREDICTED: Mus musculus PR domain containing 6 (Prdm6), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Prdm6 (225518)
Length:
3107
CDS:
482..2272

Additional Resources:

NCBI RefSeq record:
XM_017317889.1
NBCI Gene record:
Prdm6 (225518)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017317889.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000239261 CCCAACAACCGTTGCGATATG pLKO_005 1067 CDS 100% 10.800 15.120 N Prdm6 n/a
2 TRCN0000239260 GAACGTCCCTTCCACCGTAAT pLKO_005 1639 CDS 100% 10.800 15.120 N Prdm6 n/a
3 TRCN0000239259 GTTCAGTACAGGTCGAATATA pLKO_005 1502 CDS 100% 15.000 12.000 N Prdm6 n/a
4 TRCN0000254035 GTTCAGTACAGGTCGAATATA pLKO_005 1502 CDS 100% 15.000 12.000 N PRDM6 n/a
5 TRCN0000254038 CAGCATCTCTGGGAGATATAT pLKO_005 1370 CDS 100% 15.000 10.500 N PRDM6 n/a
6 TRCN0000238689 CTACCGAGCCTGTATAGATAT pLKO_005 1525 CDS 100% 13.200 9.240 N Prdm6 n/a
7 TRCN0000254037 CTACCGAGCCTGTATAGATAT pLKO_005 1525 CDS 100% 13.200 9.240 N PRDM6 n/a
8 TRCN0000238690 CTGATTGACTGGCCGGAATTA pLKO_005 2273 CDS 100% 13.200 9.240 N Prdm6 n/a
9 TRCN0000166364 CACACACACACACACACACAA pLKO.1 62 5UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017317889.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.