Transcript: Mouse XM_017318339.1

PREDICTED: Mus musculus olfactory receptor 1222 (Olfr1222), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Olfr1222 (258177)
Length:
1325
CDS:
390..1325

Additional Resources:

NCBI RefSeq record:
XM_017318339.1
NBCI Gene record:
Olfr1222 (258177)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017318339.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000187283 CCACTTCTTTGCAGGAGTTGA pLKO.1 698 CDS 100% 4.950 3.465 N Olfr1222 n/a
2 TRCN0000185326 GCATCACACAACTGTTTACTA pLKO.1 676 CDS 100% 5.625 3.375 N Olfr1222 n/a
3 TRCN0000203231 GTTTGCTAATAGTGGGTCTTT pLKO.1 983 CDS 100% 4.950 2.970 N Olfr1222 n/a
4 TRCN0000202776 CCCATGTACTTCTTCTTAATA pLKO.1 558 CDS 100% 15.000 7.500 Y Olfr1222 n/a
5 TRCN0000203794 CCTGCACTGACACACACATTT pLKO.1 949 CDS 100% 13.200 6.600 Y Olfr1222 n/a
6 TRCN0000185036 CATCATTATCTTCTCCTTGTT pLKO.1 1007 CDS 100% 4.950 2.475 Y Olfr1222 n/a
7 TRCN0000030350 GCAAGCCTCTTCACTACTCTT pLKO.1 766 CDS 100% 4.950 2.475 Y Olfr1217 n/a
8 TRCN0000187699 GCCTCTTCACTACTCTTCCAT pLKO.1 770 CDS 100% 3.000 1.500 Y Olfr1222 n/a
9 TRCN0000030377 CCTGCACTGACACACACATAT pLKO.1 949 CDS 100% 13.200 6.600 Y Olfr1226 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017318339.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.