Transcript: Mouse XM_017319179.1

PREDICTED: Mus musculus predicted gene 14326 (Gm14326), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gm14326 (665211)
Length:
11193
CDS:
980..2644

Additional Resources:

NCBI RefSeq record:
XM_017319179.1
NBCI Gene record:
Gm14326 (665211)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017319179.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235221 GGATACTGTCATAGTTATATT pLKO_005 9637 3UTR 100% 15.000 9.000 N LOC66376 n/a
2 TRCN0000234272 GGGATACTGTCATAGTTATAT pLKO_005 9636 3UTR 100% 15.000 9.000 N 9230108I15Rik n/a
3 TRCN0000240305 CATACCGGAGAGAAATCATAT pLKO_005 2444 CDS 100% 13.200 7.920 N Gm14326 n/a
4 TRCN0000262236 AGACAAAGGCATCAAATTAAA pLKO_005 1247 CDS 100% 15.000 7.500 Y Gm14305 n/a
5 TRCN0000245317 ATGAATGAGAAACCCATAAAT pLKO_005 3747 3UTR 100% 15.000 7.500 Y Gm14325 n/a
6 TRCN0000240303 GAAATTGTGAGCTGGATTAAA pLKO_005 3919 3UTR 100% 15.000 7.500 Y Gm14326 n/a
7 TRCN0000217699 GAGCAACCCTCTGAGTTTATT pLKO.1 1193 CDS 100% 15.000 7.500 Y Gm14296 n/a
8 TRCN0000231380 GAGCAACCCTCTGAGTTTATT pLKO_005 1193 CDS 100% 15.000 7.500 Y 0610010B08Rik n/a
9 TRCN0000242351 GTAGACAAAGGCATCAAATTA pLKO_005 1245 CDS 100% 15.000 7.500 Y Gm14391 n/a
10 TRCN0000245315 TAGACAAAGGCATCAAATTAA pLKO_005 1246 CDS 100% 15.000 7.500 Y Gm14325 n/a
11 TRCN0000239783 ACAAGGAGAGTCCTCCAAATA pLKO_005 2411 CDS 100% 13.200 6.600 Y Gm6710 n/a
12 TRCN0000239784 ACCAATGTGGTAAGGACTTTA pLKO_005 1296 CDS 100% 13.200 6.600 Y Gm6710 n/a
13 TRCN0000239826 AGAAGGAGTGACCTCCAAATA pLKO_005 1487 CDS 100% 13.200 6.600 Y Gm14393 n/a
14 TRCN0000245314 AGAGCAACCCTCTGAGTTTAT pLKO_005 1192 CDS 100% 13.200 6.600 Y Gm14325 n/a
15 TRCN0000226091 AGCAACCCTCTGAGTTTATTC pLKO_005 1194 CDS 100% 13.200 6.600 Y Gm2004 n/a
16 TRCN0000226094 AGTGGTCTCCAATGCCATAAA pLKO_005 2669 3UTR 100% 13.200 6.600 Y Gm2004 n/a
17 TRCN0000234204 AGTGGTCTCCAATGCCATAAA pLKO_005 2669 3UTR 100% 13.200 6.600 Y Gm14403 n/a
18 TRCN0000243736 CAAGGAGAGTCCTCCAAATAC pLKO_005 2412 CDS 100% 13.200 6.600 Y Gm14430 n/a
19 TRCN0000242399 CAGTCATCTCCGAATACATAA pLKO_005 1660 CDS 100% 13.200 6.600 Y Gm14432 n/a
20 TRCN0000242398 CTGTCATCTCCGAATACATAA pLKO_005 1408 CDS 100% 13.200 6.600 Y Gm14432 n/a
21 TRCN0000242402 GAGAAACCCTATGACTGTAAA pLKO_005 1361 CDS 100% 13.200 6.600 Y Gm14434 n/a
22 TRCN0000281929 GAGAGTCCTCCAAATACATAA pLKO_005 2248 CDS 100% 13.200 6.600 Y Gm14308 n/a
23 TRCN0000242349 GAGTGACCTCCAAATACATAA pLKO_005 1492 CDS 100% 13.200 6.600 Y Gm14393 n/a
24 TRCN0000200786 GCACATATAGTTGAGAGAAAT pLKO.1 3020 3UTR 100% 13.200 6.600 Y Gm14296 n/a
25 TRCN0000272213 GGCATCAAATTAAACATAATG pLKO_005 1254 CDS 100% 13.200 6.600 Y Gm14308 n/a
26 TRCN0000231379 TCACAGCTATAGGTTACATTT pLKO_005 1098 CDS 100% 13.200 6.600 Y 0610010B08Rik n/a
27 TRCN0000234269 TCACAGCTATAGGTTACATTT pLKO_005 1098 CDS 100% 13.200 6.600 Y 9230108I15Rik n/a
28 TRCN0000242405 TCTTGAAGGAAACAAGTATTT pLKO_005 4879 3UTR 100% 13.200 6.600 Y Gm14434 n/a
29 TRCN0000226092 TGGTAGACAAAGGCATCAAAT pLKO_005 1243 CDS 100% 13.200 6.600 Y Gm2004 n/a
30 TRCN0000231381 TGGTAGACAAAGGCATCAAAT pLKO_005 1243 CDS 100% 13.200 6.600 Y 0610010B08Rik n/a
31 TRCN0000234270 TGGTAGACAAAGGCATCAAAT pLKO_005 1243 CDS 100% 13.200 6.600 Y 9230108I15Rik n/a
32 TRCN0000240302 TGGTGACCAACAAGAACATAA pLKO_005 2164 CDS 100% 13.200 6.600 Y Gm14326 n/a
33 TRCN0000284677 ACAATGTGGTAAAGCCTTTAC pLKO_005 1969 CDS 100% 10.800 5.400 Y Gm14410 n/a
34 TRCN0000242348 ACATACAATTGAAGACCATTT pLKO_005 1126 CDS 100% 10.800 5.400 Y Gm14393 n/a
35 TRCN0000226093 AGAAGCTGTCATCTCCGAATA pLKO_005 1403 CDS 100% 10.800 5.400 Y Gm2004 n/a
36 TRCN0000240306 AGCCTTTACAGTAATCTATAC pLKO_005 1981 CDS 100% 10.800 5.400 Y Gm14326 n/a
37 TRCN0000239829 AGGAGAGAAACCCTATGAATG pLKO_005 1525 CDS 100% 10.800 5.400 Y Gm14393 n/a
38 TRCN0000243743 ATAGCAGTCATCTCCACATAC pLKO_005 1824 CDS 100% 10.800 5.400 Y Gm14411 n/a
39 TRCN0000243733 ATAGGAATCTCACAGCTATAG pLKO_005 1089 CDS 100% 10.800 5.400 Y Gm14322 n/a
40 TRCN0000281879 ATATGAGAGTGGTAGACAAAG pLKO_005 1234 CDS 100% 10.800 5.400 Y Gm14410 n/a
41 TRCN0000240304 CAAAGCAGACATCTCCGAATA pLKO_005 2075 CDS 100% 10.800 5.400 Y Gm14326 n/a
42 TRCN0000231382 CAAAGCAGTCATCTCCGAATA pLKO_005 1655 CDS 100% 10.800 5.400 Y 0610010B08Rik n/a
43 TRCN0000234271 CAAAGCAGTCATCTCCGAATA pLKO_005 1655 CDS 100% 10.800 5.400 Y 9230108I15Rik n/a
44 TRCN0000242404 CCAATGTGGTAAGGACTTTAG pLKO_005 1297 CDS 100% 10.800 5.400 Y Gm14434 n/a
45 TRCN0000239455 CTCAGAAGAGTCTCTACAAAG pLKO_005 1050 CDS 100% 10.800 5.400 Y Gm14288 n/a
46 TRCN0000245316 GAAGCTGTCATCTCCGAATAC pLKO_005 1404 CDS 100% 10.800 5.400 Y Gm14325 n/a
47 TRCN0000243739 GAATGTAAACAATGTGGTAAA pLKO_005 1625 CDS 100% 10.800 5.400 Y Gm14411 n/a
48 TRCN0000242409 GAATGTAACCAATGTGGTAAA pLKO_005 1457 CDS 100% 10.800 5.400 Y Gm14418 n/a
49 TRCN0000242347 GAGTTTATTCAATGTGGTAAA pLKO_005 1205 CDS 100% 10.800 5.400 Y Gm14393 n/a
50 TRCN0000239782 TGTGATGCTAGAGACCTATAG pLKO_005 1072 CDS 100% 10.800 5.400 Y Gm6710 n/a
51 TRCN0000086605 CCGGAGAGAAACCCTATGAAT pLKO.1 2532 CDS 100% 5.625 2.813 Y Zfp933 n/a
52 TRCN0000242410 AGGCATGAAAGAAGTTGTTCT pLKO_005 1169 CDS 100% 4.950 2.475 Y Gm14418 n/a
53 TRCN0000190377 CGAACACATACAGGAGAGAAA pLKO.1 1346 CDS 100% 4.950 2.475 Y Gm14296 n/a
54 TRCN0000242406 GAGTCTCTACAAAGGTGTGAT pLKO_005 1057 CDS 100% 4.950 2.475 Y Gm14418 n/a
55 TRCN0000202246 GCGAACACATACAGGAGAGAA pLKO.1 1345 CDS 100% 4.950 2.475 Y Gm14296 n/a
56 TRCN0000243730 GTAGACAAAGGCATCAAATAA pLKO_005 1245 CDS 100% 15.000 7.500 Y Gm14322 n/a
57 TRCN0000235325 GTGATGCTAGAGACCTATAAG pLKO_005 1073 CDS 100% 13.200 6.600 Y OTTMUSG00000016228 n/a
58 TRCN0000262238 TACAGGAGAGAAACCCTATAA pLKO_005 1354 CDS 100% 13.200 6.600 Y Gm14305 n/a
59 TRCN0000242397 TGGTAAAGCCTTTGCAGTAAT pLKO_005 1891 CDS 100% 13.200 6.600 Y Gm14432 n/a
60 TRCN0000231378 TGTGATGCTAGAGACCTATAA pLKO_005 1072 CDS 100% 13.200 6.600 Y 0610010B08Rik n/a
61 TRCN0000239828 ACTGTAACCAATGTGGTAAAG pLKO_005 1290 CDS 100% 10.800 5.400 Y Gm14393 n/a
62 TRCN0000284648 ATACAGGAGAGAAACCCTATA pLKO_005 1353 CDS 100% 10.800 5.400 Y Gm14308 n/a
63 TRCN0000239453 CATACAATTGAAGACCATTTC pLKO_005 1127 CDS 100% 10.800 5.400 Y Gm14288 n/a
64 TRCN0000242350 GACTGTAACCAATGTGGTAAA pLKO_005 1289 CDS 100% 10.800 5.400 Y Gm14393 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017319179.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.