Transcript: Mouse XM_017320570.1

PREDICTED: Mus musculus predicted gene 3286 (Gm3286), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gm3286 (100041354)
Length:
2296
CDS:
417..1862

Additional Resources:

NCBI RefSeq record:
XM_017320570.1
NBCI Gene record:
Gm3286 (100041354)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017320570.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000255001 CCATCACTCACTGCCTAATTT pLKO_005 1324 CDS 100% 15.000 7.500 Y Gm16367 n/a
2 TRCN0000255000 ATTATTTGCTCTCGATCTTAT pLKO_005 1421 CDS 100% 13.200 6.600 Y Gm16367 n/a
3 TRCN0000269611 CAAGATGAATGTGGAACAATA pLKO_005 1643 CDS 100% 13.200 6.600 Y E330014E10Rik n/a
4 TRCN0000269612 CAGACTCAACAAGCTCATAAA pLKO_005 554 CDS 100% 13.200 6.600 Y E330014E10Rik n/a
5 TRCN0000262970 CATCACTCACTGCCTAATTTC pLKO_005 1325 CDS 100% 13.200 6.600 Y Gm3286 n/a
6 TRCN0000262966 GCAGACTCAACAAGCTCATAA pLKO_005 553 CDS 100% 13.200 6.600 Y Gm3286 n/a
7 TRCN0000262969 GGATGCACCAGACGAAGTTAT pLKO_005 977 CDS 100% 13.200 6.600 Y Gm3286 n/a
8 TRCN0000269549 TCCATCACTCACTGCCTAATT pLKO_005 1323 CDS 100% 13.200 6.600 Y E330014E10Rik n/a
9 TRCN0000262968 TCTGTTGCGGCTGGCACATTT pLKO_005 1064 CDS 100% 13.200 6.600 Y Gm3286 n/a
10 TRCN0000262967 AGATAGAAATGTGGACTATTC pLKO_005 2007 3UTR 100% 10.800 5.400 Y Gm3286 n/a
11 TRCN0000269613 CAATCAGTTCTCAGCTCAATG pLKO_005 877 CDS 100% 10.800 5.400 Y E330014E10Rik n/a
12 TRCN0000254999 GGCAGCGTCTGAAGATCATAG pLKO_005 847 CDS 100% 10.800 5.400 Y Gm16367 n/a
13 TRCN0000193744 CCAGGTGAATATGGCATGTAT pLKO.1 2251 3UTR 100% 5.625 2.813 Y D5Ertd577e n/a
14 TRCN0000174286 CGAAGTTATCAGAGAAATCAT pLKO.1 989 CDS 100% 5.625 2.813 Y D5Ertd577e n/a
15 TRCN0000175000 GAGAAAGATTTGTGGAACTTT pLKO.1 1708 CDS 100% 5.625 2.813 Y D5Ertd577e n/a
16 TRCN0000193298 CAGACGAAGTTATCAGAGAAA pLKO.1 985 CDS 100% 4.950 2.475 Y D5Ertd577e n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017320570.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.