Transcript: Mouse XM_017321604.1

PREDICTED: Mus musculus deoxyguanosine kinase (Dguok), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Dguok (27369)
Length:
964
CDS:
229..771

Additional Resources:

NCBI RefSeq record:
XM_017321604.1
NBCI Gene record:
Dguok (27369)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017321604.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000006077 AGCACGATGGTCCTACACATT pLKO.1 246 CDS 100% 4.950 3.960 N DGUOK n/a
2 TRCN0000338412 AGCACGATGGTCCTACACATT pLKO_005 246 CDS 100% 4.950 3.960 N DGUOK n/a
3 TRCN0000025534 CGTCTTGGAAACTTGCTAGAA pLKO.1 208 5UTR 100% 4.950 3.960 N Dguok n/a
4 TRCN0000278723 CGTCTTGGAAACTTGCTAGAA pLKO_005 208 5UTR 100% 4.950 3.960 N Dguok n/a
5 TRCN0000025538 GCACTTCCAAACGTCTTGGAA pLKO.1 197 5UTR 100% 0.300 0.240 N Dguok n/a
6 TRCN0000278603 GCACTTCCAAACGTCTTGGAA pLKO_005 197 5UTR 100% 0.300 0.240 N Dguok n/a
7 TRCN0000025536 GCACGAAGACTGGTTTATTAA pLKO.1 612 CDS 100% 15.000 10.500 N Dguok n/a
8 TRCN0000278602 GCACGAAGACTGGTTTATTAA pLKO_005 612 CDS 100% 15.000 10.500 N Dguok n/a
9 TRCN0000025537 GAACACCTTTATGAGGAACTT pLKO.1 747 CDS 100% 4.950 3.465 N Dguok n/a
10 TRCN0000278667 GAACACCTTTATGAGGAACTT pLKO_005 747 CDS 100% 4.950 3.465 N Dguok n/a
11 TRCN0000025535 GCTTCATCTATCTCCAGGCTT pLKO.1 500 CDS 100% 2.640 1.848 N Dguok n/a
12 TRCN0000278666 GCTTCATCTATCTCCAGGCTT pLKO_005 500 CDS 100% 2.640 1.848 N Dguok n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017321604.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.