Transcript: Mouse XM_017322081.1

PREDICTED: Mus musculus aurora kinase C (Aurkc), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Aurkc (20871)
Length:
3357
CDS:
2381..3211

Additional Resources:

NCBI RefSeq record:
XM_017322081.1
NBCI Gene record:
Aurkc (20871)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017322081.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000361475 CTATGATGACACTCGGATATA pLKO_005 2629 CDS 100% 13.200 9.240 N Aurkc n/a
2 TRCN0000218794 ATCTGACCTTTGAAGATATGG pLKO_005 268 5UTR 100% 4.950 3.465 N Zfp264 n/a
3 TRCN0000361478 CAGCGTACAGCCACGATAATA pLKO_005 2720 CDS 100% 15.000 9.000 N Aurkc n/a
4 TRCN0000218135 AGATGATGCTGGAAATCTATG pLKO_005 352 5UTR 100% 10.800 6.480 N Zfp264 n/a
5 TRCN0000361477 TAGCGCAGAAACCGTACAATG pLKO_005 2931 CDS 100% 10.800 6.480 N Aurkc n/a
6 TRCN0000027621 CCGGAAATGATAGCGCAGAAA pLKO.1 2921 CDS 100% 4.950 2.970 N Aurkc n/a
7 TRCN0000361476 CTTGATCTCCAAGCTTCTTAG pLKO_005 3103 CDS 100% 10.800 5.400 Y Aurkc n/a
8 TRCN0000027648 CCATGAGAAGAAGGTGATTCA pLKO.1 2770 CDS 100% 4.950 2.475 Y Aurkc n/a
9 TRCN0000027633 CCGTACAATGAGATGGTTGAT pLKO.1 2942 CDS 100% 4.950 2.475 Y Aurkc n/a
10 TRCN0000079020 GTCCTCTTCAAGTCTGAGATA pLKO.1 2516 CDS 100% 4.950 2.475 Y LOC385186 n/a
11 TRCN0000027610 GCACCTCCAGTGAGACATATA pLKO.1 3024 CDS 100% 13.200 6.600 Y LOC381698 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017322081.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.