Transcript: Human XM_024446754.1

PREDICTED: Homo sapiens zinc finger and BTB domain containing 41 (ZBTB41), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZBTB41 (360023)
Length:
8692
CDS:
286..3015

Additional Resources:

NCBI RefSeq record:
XM_024446754.1
NBCI Gene record:
ZBTB41 (360023)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024446754.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000244941 ATCACGGTTTGCTCGGTTAAA pLKO_005 1788 CDS 100% 13.200 18.480 N ZBTB41 n/a
2 TRCN0000216816 GATCCATCTAGGCTATCATAA pLKO.1 324 CDS 100% 13.200 18.480 N Zbtb41 n/a
3 TRCN0000148580 CCGTCATGATCACCTTACAAA pLKO.1 2124 CDS 100% 5.625 7.875 N ZBTB41 n/a
4 TRCN0000147889 GCGCTATTCAACAAAGTCTAA pLKO.1 1473 CDS 100% 4.950 6.930 N ZBTB41 n/a
5 TRCN0000129048 GCTCGGTTAAAGCATCAAGAA pLKO.1 1798 CDS 100% 4.950 6.930 N ZBTB41 n/a
6 TRCN0000244944 CTAATCTGCTGCCTCTAATTT pLKO_005 5649 3UTR 100% 15.000 10.500 N ZBTB41 n/a
7 TRCN0000241769 TGCTGTCGGCAGTAGTTATTT pLKO_005 603 CDS 100% 15.000 10.500 N Zbtb41 n/a
8 TRCN0000244940 TGCTGTCGGCAGTAGTTATTT pLKO_005 603 CDS 100% 15.000 10.500 N ZBTB41 n/a
9 TRCN0000244943 GATCCTAGAGAACAATCTTAT pLKO_005 2923 CDS 100% 13.200 9.240 N ZBTB41 n/a
10 TRCN0000147706 GCAGTGTCCTAAATGTGATAA pLKO.1 1368 CDS 100% 13.200 9.240 N ZBTB41 n/a
11 TRCN0000129908 GCCAAGCATGTTAAGAGATTT pLKO.1 1597 CDS 100% 13.200 9.240 N ZBTB41 n/a
12 TRCN0000244942 TATCCACGAGCAGCGGATTTA pLKO_005 2827 CDS 100% 13.200 9.240 N ZBTB41 n/a
13 TRCN0000131190 GACCACACTTGGAGGAACATA pLKO.1 1709 CDS 100% 5.625 3.938 N ZBTB41 n/a
14 TRCN0000128343 GATGGGTCAGACAATTTGAAT pLKO.1 1108 CDS 100% 5.625 3.938 N ZBTB41 n/a
15 TRCN0000148276 CTTCACTTACGAGTACATCAT pLKO.1 2059 CDS 100% 4.950 3.465 N ZBTB41 n/a
16 TRCN0000149075 GAGAAGATCCATCTAGGCTAT pLKO.1 319 CDS 100% 4.050 2.835 N ZBTB41 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024446754.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.