Transcript: Human XM_024450366.1

PREDICTED: Homo sapiens post-glycosylphosphatidylinositol attachment to proteins 6 (PGAP6), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PGAP6 (58986)
Length:
3713
CDS:
130..2514

Additional Resources:

NCBI RefSeq record:
XM_024450366.1
NBCI Gene record:
PGAP6 (58986)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024450366.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000413427 TTGGCCTAGATACCCTCTTAC pLKO_005 2623 3UTR 100% 10.800 15.120 N PGAP6 n/a
2 TRCN0000431819 CAATGCCTCCGTCAACGTTTC pLKO_005 546 CDS 100% 6.000 8.400 N PGAP6 n/a
3 TRCN0000141142 CATGATGACTAGCGACAACTA pLKO.1 2331 CDS 100% 4.950 6.930 N PGAP6 n/a
4 TRCN0000422679 TCACGCGGGTGGTCGAGATTT pLKO_005 683 CDS 100% 4.400 6.160 N PGAP6 n/a
5 TRCN0000140858 CCTTGGCTTCAATACTTCGCT pLKO.1 1410 CDS 100% 0.750 1.050 N PGAP6 n/a
6 TRCN0000142513 GCTCAAGACAGTCCTGAAATA pLKO.1 2079 CDS 100% 13.200 9.240 N PGAP6 n/a
7 TRCN0000425579 GCAGACACAGCTACCTGTATG pLKO_005 1664 CDS 100% 10.800 7.560 N PGAP6 n/a
8 TRCN0000144423 CTGAAATACGTGCTGTTTCTT pLKO.1 2092 CDS 100% 5.625 3.938 N PGAP6 n/a
9 TRCN0000139235 CCCTGTTTGAACGATTGTGGA pLKO.1 1618 CDS 100% 2.640 1.848 N PGAP6 n/a
10 TRCN0000139378 CAACAAGACAGAGATGCGGAA pLKO.1 1347 CDS 100% 2.160 1.512 N PGAP6 n/a
11 TRCN0000157839 CCATGTTCTTCTCCACGGTAT pLKO.1 1868 CDS 100% 4.050 2.025 Y TMEM8B n/a
12 TRCN0000139453 CACCATGTTCTTCTCCACGTT pLKO.1 1866 CDS 100% 2.640 1.320 Y PGAP6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024450366.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.