Transcript: Human XM_024450655.1

PREDICTED: Homo sapiens zinc finger protein 652 (ZNF652), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF652 (22834)
Length:
11453
CDS:
431..2251

Additional Resources:

NCBI RefSeq record:
XM_024450655.1
NBCI Gene record:
ZNF652 (22834)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024450655.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000297715 ATCGGGAAGGCTGTGAGATTA pLKO_005 2625 3UTR 100% 13.200 18.480 N ZNF652 n/a
2 TRCN0000297719 GCACATGAACGTTACTCATAG pLKO_005 1216 CDS 100% 10.800 15.120 N ZNF652 n/a
3 TRCN0000156002 CCTGTCCACCAAAGTGTACAA pLKO.1 565 CDS 100% 4.950 6.930 N ZNF652 n/a
4 TRCN0000279618 CCTGTCCACCAAAGTGTACAA pLKO_005 565 CDS 100% 4.950 6.930 N ZNF652 n/a
5 TRCN0000152970 GACATGCCATTTACATGCGAA pLKO.1 1490 CDS 100% 2.640 3.696 N ZNF652 n/a
6 TRCN0000188593 GAGCAGATCATAGTGGAGGTA pLKO.1 773 CDS 100% 2.640 3.696 N Zfp652 n/a
7 TRCN0000151480 CGCATGCAGATTTGTGATAAA pLKO.1 1238 CDS 100% 13.200 10.560 N ZNF652 n/a
8 TRCN0000279635 CGCATGCAGATTTGTGATAAA pLKO_005 1238 CDS 100% 13.200 10.560 N ZNF652 n/a
9 TRCN0000187880 GCAGATCATAGTGGAGGTAAA pLKO.1 775 CDS 100% 10.800 8.640 N Zfp652 n/a
10 TRCN0000278523 TAGTGGAGGTAAACCTTAATA pLKO_005 783 CDS 100% 15.000 10.500 N ZNF652 n/a
11 TRCN0000153542 CCAGCATTCTTAGGCGATAAA pLKO.1 3657 3UTR 100% 13.200 9.240 N ZNF652 n/a
12 TRCN0000154051 CCACTGAACTAAAGCCCAATT pLKO.1 2458 3UTR 100% 10.800 7.560 N ZNF652 n/a
13 TRCN0000153625 CCAAAGAGACTCCTGTTCTTA pLKO.1 852 CDS 100% 5.625 3.938 N ZNF652 n/a
14 TRCN0000152364 CCACAGAATCAACCATTTCAT pLKO.1 5070 3UTR 100% 5.625 3.938 N ZNF652 n/a
15 TRCN0000187739 GCAAGAAGTTTGTCCTGGAAA pLKO.1 1263 CDS 100% 4.950 3.465 N Zfp652 n/a
16 TRCN0000151247 GCTGAGAAATTCAGATGAGAA pLKO.1 3492 3UTR 100% 4.950 3.465 N ZNF652 n/a
17 TRCN0000153154 GAGCATTCATATTGGGCACAA pLKO.1 1642 CDS 100% 4.050 2.835 N ZNF652 n/a
18 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 4040 3UTR 100% 2.640 1.320 Y LINC01098 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024450655.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.