Transcript: Human XM_024450836.1

PREDICTED: Homo sapiens WD repeat domain 45B (WDR45B), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
WDR45B (56270)
Length:
2627
CDS:
590..1270

Additional Resources:

NCBI RefSeq record:
XM_024450836.1
NBCI Gene record:
WDR45B (56270)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024450836.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000148944 CGTCTTCGAAACCTGCTATAA pLKO.1 634 CDS 100% 13.200 18.480 N WDR45B n/a
2 TRCN0000343532 CGTCTTCGAAACCTGCTATAA pLKO_005 634 CDS 100% 13.200 18.480 N WDR45B n/a
3 TRCN0000131124 GCAGAGTGATGCACGAACTTT pLKO.1 2071 3UTR 100% 5.625 7.875 N WDR45B n/a
4 TRCN0000281233 GCAGAGTGATGCACGAACTTT pLKO_005 2071 3UTR 100% 5.625 7.875 N WDR45B n/a
5 TRCN0000130969 CCATACGTGGTTGTCTGCTTT pLKO.1 1396 3UTR 100% 4.950 6.930 N WDR45B n/a
6 TRCN0000281235 CCATACGTGGTTGTCTGCTTT pLKO_005 1396 3UTR 100% 4.950 6.930 N WDR45B n/a
7 TRCN0000146668 CCATGATTAAGGTGTTCACAT pLKO.1 588 5UTR 100% 4.950 6.930 N WDR45B n/a
8 TRCN0000128460 GCTACTACAAATTCCTGTTCA pLKO.1 1182 CDS 100% 4.950 3.960 N WDR45B n/a
9 TRCN0000147320 GCCGGTTTCTTTAGTTCTTTA pLKO.1 2447 3UTR 100% 13.200 9.240 N WDR45B n/a
10 TRCN0000281164 GCCGGTTTCTTTAGTTCTTTA pLKO_005 2447 3UTR 100% 13.200 9.240 N WDR45B n/a
11 TRCN0000149162 GCTCTACATTGTCAGCTACTT pLKO.1 2321 3UTR 100% 4.950 3.465 N WDR45B n/a
12 TRCN0000173574 GAGGATCTCAAGCAGCCAATA pLKO.1 912 CDS 100% 10.800 6.480 N Wdr45b n/a
13 TRCN0000292933 GAGGATCTCAAGCAGCCAATA pLKO_005 912 CDS 100% 10.800 6.480 N Wdr45b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024450836.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14218 pDONR223 100% 78.9% 78.6% None 0_1ins180;553A>G n/a
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