Transcript: Human XM_024452734.1

PREDICTED: Homo sapiens Fas associated factor 1 (FAF1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
FAF1 (11124)
Length:
2119
CDS:
16..1944

Additional Resources:

NCBI RefSeq record:
XM_024452734.1
NBCI Gene record:
FAF1 (11124)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024452734.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000004248 CGTAACTCAACTGGACCCAAA pLKO.1 1860 CDS 100% 4.050 3.240 N FAF1 n/a
2 TRCN0000004245 CCTGTACTGTTGGAGAGATTA pLKO.1 347 CDS 100% 13.200 9.240 N FAF1 n/a
3 TRCN0000318730 CCTGTACTGTTGGAGAGATTA pLKO_005 347 CDS 100% 13.200 9.240 N FAF1 n/a
4 TRCN0000004246 GCCCAACAACAGGAAGATATA pLKO.1 1456 CDS 100% 13.200 9.240 N FAF1 n/a
5 TRCN0000318798 GCCCAACAACAGGAAGATATA pLKO_005 1456 CDS 100% 13.200 9.240 N FAF1 n/a
6 TRCN0000004247 CGCTCGTCTCACTCAATTCAA pLKO.1 2029 3UTR 100% 5.625 3.938 N FAF1 n/a
7 TRCN0000318799 CGCTCGTCTCACTCAATTCAA pLKO_005 2029 3UTR 100% 5.625 3.938 N FAF1 n/a
8 TRCN0000191814 GAAATGTGTATGACCTTACAA pLKO.1 656 CDS 100% 5.625 3.938 N Faf1 n/a
9 TRCN0000277490 GAAATGTGTATGACCTTACAA pLKO_005 656 CDS 100% 5.625 3.938 N Faf1 n/a
10 TRCN0000004244 GCACAAACCATTCGGACTCAA pLKO.1 1300 CDS 100% 4.950 3.465 N FAF1 n/a
11 TRCN0000318731 GCACAAACCATTCGGACTCAA pLKO_005 1300 CDS 100% 4.950 3.465 N FAF1 n/a
12 TRCN0000200511 CGATCATCTAATGAAGTGTTA pLKO.1 1363 CDS 100% 4.950 3.960 N Faf1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024452734.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.