Transcript: Human XM_024453986.1

PREDICTED: Homo sapiens zinc finger protein 330 (ZNF330), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF330 (27309)
Length:
1662
CDS:
193..1155

Additional Resources:

NCBI RefSeq record:
XM_024453986.1
NBCI Gene record:
ZNF330 (27309)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024453986.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000098707 CGGCAGAAGAATAGAGCATTT pLKO.1 334 CDS 100% 10.800 15.120 N Zfp330 n/a
2 TRCN0000318043 CGGCAGAAGAATAGAGCATTT pLKO_005 334 CDS 100% 10.800 15.120 N Zfp330 n/a
3 TRCN0000135115 CATGTCACCTTGAGTTGTCAT pLKO.1 1637 3UTR 100% 4.950 6.930 N ZNF330 n/a
4 TRCN0000135633 GCATGAAACTCAGGAGACTAA pLKO.1 843 CDS 100% 4.950 6.930 N ZNF330 n/a
5 TRCN0000134777 CTATGAGGAACAAGAGAACTA pLKO.1 1134 CDS 100% 4.950 3.960 N ZNF330 n/a
6 TRCN0000135628 GCTTCTGGGTATGATGCTTAT pLKO.1 931 CDS 100% 10.800 7.560 N ZNF330 n/a
7 TRCN0000135037 CAGATACTGAGTCATCAGATT pLKO.1 1064 CDS 100% 4.950 3.465 N ZNF330 n/a
8 TRCN0000135651 GAAGTCTTCAGACTGTGTCAT pLKO.1 423 CDS 100% 4.950 3.465 N ZNF330 n/a
9 TRCN0000134462 GATGATCATACAAGGAGCAAA pLKO.1 775 CDS 100% 4.950 3.465 N ZNF330 n/a
10 TRCN0000134393 GCAATATGTGACTTCTGTGAA pLKO.1 487 CDS 100% 4.950 3.465 N ZNF330 n/a
11 TRCN0000133903 CTTGATGAATTGTGTGTGGTT pLKO.1 1207 3UTR 100% 2.640 1.848 N ZNF330 n/a
12 TRCN0000134943 GCAGAAGACTAGTTACACTTA pLKO.1 1259 3UTR 100% 0.000 0.000 N ZNF330 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024453986.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.