Transcript: Mouse XM_030242508.1

PREDICTED: Mus musculus transmembrane protein 159 (Tmem159), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Tmem159 (233806)
Length:
1552
CDS:
335..820

Additional Resources:

NCBI RefSeq record:
XM_030242508.1
NBCI Gene record:
Tmem159 (233806)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_030242508.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000126564 GCGGCTAAGATAGATTGTATT pLKO.1 1104 3UTR 100% 13.200 18.480 N Tmem159 n/a
2 TRCN0000312190 GCGGCTAAGATAGATTGTATT pLKO_005 1104 3UTR 100% 13.200 18.480 N Tmem159 n/a
3 TRCN0000313244 GAGTCTGAGAGGCTCATATTT pLKO_005 797 CDS 100% 15.000 10.500 N Tmem159 n/a
4 TRCN0000126566 GTTAGAGTCTTTCCTGAATAA pLKO.1 403 CDS 100% 13.200 9.240 N Tmem159 n/a
5 TRCN0000312189 GTTAGAGTCTTTCCTGAATAA pLKO_005 403 CDS 100% 13.200 9.240 N Tmem159 n/a
6 TRCN0000313172 CTCTCACCGTGCTGATGTTTG pLKO_005 489 CDS 100% 10.800 7.560 N Tmem159 n/a
7 TRCN0000313243 ATAGCCATGATGTCCTATGTG pLKO_005 680 CDS 100% 4.950 3.465 N Tmem159 n/a
8 TRCN0000126565 CGTGCTGATGTTTGTTACCAT pLKO.1 496 CDS 100% 3.000 2.100 N Tmem159 n/a
9 TRCN0000126567 GCTATGAAGTTCACGGAGTCT pLKO.1 782 CDS 100% 2.640 1.848 N Tmem159 n/a
10 TRCN0000126568 GTTCCTGGACAGACATCCTTT pLKO.1 463 CDS 100% 4.950 2.970 N Tmem159 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_030242508.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.