Transcript: Mouse XM_030251066.1

PREDICTED: Mus musculus nudix (nucleoside diphosphate linked moiety X)-type motif 22 (Nudt22), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Nudt22 (68323)
Length:
965
CDS:
114..743

Additional Resources:

NCBI RefSeq record:
XM_030251066.1
NBCI Gene record:
Nudt22 (68323)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_030251066.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000181841 GCCCAACCTTGGATCTTTGAT pLKO.1 264 CDS 100% 5.625 3.938 N Nudt22 n/a
2 TRCN0000328052 GCCCAACCTTGGATCTTTGAT pLKO_005 264 CDS 100% 5.625 3.938 N Nudt22 n/a
3 TRCN0000198168 CGAGTCTACAGGAATCATCTT pLKO.1 750 3UTR 100% 4.950 3.465 N Nudt22 n/a
4 TRCN0000177471 GTCTACAGGAATCATCTTTGT pLKO.1 753 3UTR 100% 4.950 3.465 N Nudt22 n/a
5 TRCN0000328053 GTCTACAGGAATCATCTTTGT pLKO_005 753 3UTR 100% 4.950 3.465 N Nudt22 n/a
6 TRCN0000178387 GTCAGGAGTTATTACCTGAGT pLKO.1 712 CDS 100% 0.264 0.185 N Nudt22 n/a
7 TRCN0000327979 GTCAGGAGTTATTACCTGAGT pLKO_005 712 CDS 100% 0.264 0.185 N Nudt22 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_030251066.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.