Transcript: Human XR_001740182.1

PREDICTED: Homo sapiens ATR serine/threonine kinase (ATR), transcript variant X8, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ATR (545)
Length:
6339
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001740182.1
NBCI Gene record:
ATR (545)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001740182.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000039614 CCGGATACTTACAGATGTAAA pLKO.1 215 3UTR 100% 13.200 18.480 N ATR n/a
2 TRCN0000332960 CCGGATACTTACAGATGTAAA pLKO_005 215 3UTR 100% 13.200 18.480 N ATR n/a
3 TRCN0000219647 CTCCGTGATGTTGCTTGATTT pLKO.1 281 3UTR 100% 13.200 18.480 N ATR n/a
4 TRCN0000332905 CTCCGTGATGTTGCTTGATTT pLKO_005 281 3UTR 100% 13.200 18.480 N ATR n/a
5 TRCN0000039615 GCCGCTAATCTTCTAACATTA pLKO.1 1929 3UTR 100% 13.200 18.480 N ATR n/a
6 TRCN0000195227 CCAACGAGGATATGAATATAT pLKO.1 5627 3UTR 100% 15.000 10.500 N ATR n/a
7 TRCN0000196538 GATGAACACATGGGATATTTA pLKO.1 636 3UTR 100% 15.000 10.500 N ATR n/a
8 TRCN0000344499 GATGAACACATGGGATATTTA pLKO_005 636 3UTR 100% 15.000 10.500 N ATR n/a
9 TRCN0000219648 TAATGGTTCTTACTCGTATTA pLKO.1 718 3UTR 100% 13.200 9.240 N ATR n/a
10 TRCN0000039617 GCTGATTATTTACAACCCAAA pLKO.1 3447 3UTR 100% 4.050 2.835 N ATR n/a
11 TRCN0000010300 GAAAGAGGCTCCTACCAACGA pLKO.1 5613 3UTR 100% 2.640 1.848 N ATR n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001740182.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.