Transcript: Human XR_001740371.2

PREDICTED: Homo sapiens solute carrier family 4 member 7 (SLC4A7), transcript variant X13, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC4A7 (9497)
Length:
7556
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001740371.2
NBCI Gene record:
SLC4A7 (9497)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001740371.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000043161 CCAGTTATTTGACCGTATAAA pLKO.1 2916 3UTR 100% 15.000 21.000 N SLC4A7 n/a
2 TRCN0000043160 GCAATTTAAGACCAAGCGTTA pLKO.1 2289 3UTR 100% 4.050 5.670 N SLC4A7 n/a
3 TRCN0000335843 GTGTTATATTACTCGATTTAC pLKO_005 1908 3UTR 100% 13.200 10.560 N SLC4A7 n/a
4 TRCN0000369213 ATTGAACCAAGAGGCATTATA pLKO_005 3515 3UTR 100% 15.000 10.500 N SLC4A7 n/a
5 TRCN0000043158 GCTCCCTTTAACCATATAATT pLKO.1 5023 3UTR 100% 15.000 10.500 N SLC4A7 n/a
6 TRCN0000335958 TGGTCATCATGGACCTTATAT pLKO_005 2202 3UTR 100% 15.000 10.500 N SLC4A7 n/a
7 TRCN0000369212 TTTCCATGATGTAGCTTATAA pLKO_005 1423 3UTR 100% 15.000 10.500 N SLC4A7 n/a
8 TRCN0000369139 CCGCTCTGGAAGGTCCATATT pLKO_005 2992 3UTR 100% 13.200 9.240 N SLC4A7 n/a
9 TRCN0000335876 TAATCCTTGGTGGACCTTATT pLKO_005 2481 3UTR 100% 13.200 9.240 N SLC4A7 n/a
10 TRCN0000043162 CCATGAAATTGGACGATCAAT pLKO.1 1378 3UTR 100% 5.625 3.938 N SLC4A7 n/a
11 TRCN0000043159 GCAATGAAACTCTAGCACAAT pLKO.1 2084 3UTR 100% 4.950 3.465 N SLC4A7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001740371.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.