Transcript: Human XR_001741207.2

PREDICTED: Homo sapiens glycine receptor beta (GLRB), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
GLRB (2743)
Length:
3507
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001741207.2
NBCI Gene record:
GLRB (2743)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001741207.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000412420 GTGCTCTAATAACGATGTATA pLKO_005 3125 3UTR 100% 13.200 18.480 N GLRB n/a
2 TRCN0000431492 TGCCAACTCCACTAGCAATAT pLKO_005 337 3UTR 100% 13.200 18.480 N GLRB n/a
3 TRCN0000061710 GAACAGGTTATTGGTCAGTTA pLKO.1 361 3UTR 100% 4.950 6.930 N GLRB n/a
4 TRCN0000432985 ACTGATGATTTACGATTTATC pLKO_005 803 3UTR 100% 13.200 9.240 N GLRB n/a
5 TRCN0000061708 GCAAAGCGAATTGATCTTTAT pLKO.1 2860 3UTR 100% 13.200 9.240 N GLRB n/a
6 TRCN0000419237 GTCAGCATGAGGTTATCTATT pLKO_005 698 3UTR 100% 13.200 9.240 N GLRB n/a
7 TRCN0000426729 AGTCTGATCTGAGATCTAATG pLKO_005 2687 3UTR 100% 10.800 7.560 N GLRB n/a
8 TRCN0000061711 CCTTTGGACTTGACATTGTTT pLKO.1 731 3UTR 100% 5.625 3.938 N GLRB n/a
9 TRCN0000061709 GCTTATTGCTTGCCTTCTCTT pLKO.1 2448 3UTR 100% 4.950 3.465 N GLRB n/a
10 TRCN0000061712 CCAACAATGTACAAGTGTTTA pLKO.1 575 3UTR 100% 13.200 7.920 N GLRB n/a
11 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 2148 3UTR 100% 5.625 2.813 Y KLHL30 n/a
12 TRCN0000165534 GAGACAGGGTTTCACCATGTT pLKO.1 2077 3UTR 100% 4.950 2.475 Y n/a
13 TRCN0000130146 CAGGTTCAAGTGATTCTCCTA pLKO.1 1985 3UTR 100% 2.640 1.320 Y DICER1-AS1 n/a
14 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 2148 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001741207.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.