Transcript: Human XR_001741345.1

PREDICTED: Homo sapiens cyclin dependent kinase like 2 (CDKL2), transcript variant X6, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CDKL2 (8999)
Length:
4237
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001741345.1
NBCI Gene record:
CDKL2 (8999)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001741345.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000355562 GATGTGTTTAGGTAATCTAAT pLKO_005 889 3UTR 100% 13.200 18.480 N CDKL2 n/a
2 TRCN0000338224 GCGAGAAATCAAGTTACTAAA pLKO_005 391 3UTR 100% 13.200 18.480 N CDKL2 n/a
3 TRCN0000350964 CGTTGTCAAGCTATGCGATTT pLKO_005 658 3UTR 100% 10.800 15.120 N CDKL2 n/a
4 TRCN0000000728 TGCGAGAAATCAAGTTACTAA pLKO.1 390 3UTR 100% 5.625 7.875 N CDKL2 n/a
5 TRCN0000199431 CCATTGGTTGTCTGGTAACTG pLKO.1 804 3UTR 100% 4.950 6.930 N CDKL2 n/a
6 TRCN0000378478 GGGAGGTTTATACTGATTATG pLKO_005 708 3UTR 100% 13.200 9.240 N CDKL2 n/a
7 TRCN0000338223 TCACGTCCACCGATGCTATTT pLKO_005 1761 3UTR 100% 13.200 9.240 N CDKL2 n/a
8 TRCN0000418915 TTACTGTTAGGAGATTGTATA pLKO_005 1837 3UTR 100% 13.200 9.240 N CDKL2 n/a
9 TRCN0000000727 CCATCAGGCATTTATAACATT pLKO.1 1323 3UTR 100% 5.625 3.938 N CDKL2 n/a
10 TRCN0000000726 GAGTTATGGAATGGTGATGAA pLKO.1 283 3UTR 100% 4.950 3.465 N CDKL2 n/a
11 TRCN0000338222 GAGTTATGGAATGGTGATGAA pLKO_005 283 3UTR 100% 4.950 3.465 N CDKL2 n/a
12 TRCN0000000724 GAACTGGATGATGCTCTTGCA pLKO.1 1548 3UTR 100% 2.640 1.848 N CDKL2 n/a
13 TRCN0000195050 CTGATATTGATCAGCTATATC pLKO.1 861 3UTR 100% 1.320 0.924 N CDKL2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001741345.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.