Transcript: Human XR_001743553.2

PREDICTED: Homo sapiens REV3 like, DNA directed polymerase zeta catalytic subunit (REV3L), transcript variant X11, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
REV3L (5980)
Length:
10880
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001743553.2
NBCI Gene record:
REV3L (5980)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001743553.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000053126 GCGTTCTCTAAAGCTGCTATT pLKO.1 9117 3UTR 100% 10.800 15.120 N REV3L n/a
2 TRCN0000053123 CGAGCTATTAAACTGGTGAAT pLKO.1 8788 3UTR 100% 4.950 6.930 N REV3L n/a
3 TRCN0000244440 CTAGTGATATCTCCAATTAAT pLKO_005 6837 3UTR 100% 0.000 0.000 N REV3L n/a
4 TRCN0000053125 CGGAGCCATAATGAATAAATT pLKO.1 722 3UTR 100% 15.000 12.000 N REV3L n/a
5 TRCN0000244439 CTTCTATGCTAACCGAATTAA pLKO_005 10026 3UTR 100% 15.000 12.000 N REV3L n/a
6 TRCN0000244437 CTGATGAAAGTGGACTAAATA pLKO_005 2590 3UTR 100% 15.000 10.500 N REV3L n/a
7 TRCN0000244438 GCTAAACCAATGAACTATATT pLKO_005 8088 3UTR 100% 15.000 10.500 N REV3L n/a
8 TRCN0000244436 TGACCTGTCTGAGACTATTTA pLKO_005 5990 3UTR 100% 15.000 10.500 N REV3L n/a
9 TRCN0000053127 GCTGAGTTTGAGGGAGACTTT pLKO.1 6111 3UTR 100% 4.950 3.465 N REV3L n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001743553.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.