Transcript: Human XR_001744852.1

PREDICTED: Homo sapiens zinc finger protein 862 (ZNF862), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF862 (643641)
Length:
6621
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001744852.1
NBCI Gene record:
ZNF862 (643641)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001744852.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000262284 GCAGTTCCCATGGTTAGTAAT pLKO_005 2486 3UTR 100% 13.200 18.480 N ZNF862 n/a
2 TRCN0000262285 GACCTAATCTCCATGATAAAT pLKO_005 2551 3UTR 100% 15.000 10.500 N ZNF862 n/a
3 TRCN0000282170 CTCAACCTGGCCAGGTATTTC pLKO_005 3981 3UTR 100% 13.200 9.240 N ZNF862 n/a
4 TRCN0000262286 GACAAACGGTCAAGACTAATA pLKO_005 1587 3UTR 100% 13.200 9.240 N ZNF862 n/a
5 TRCN0000020998 CGGCTTCCACTTTGTCAAGTT pLKO.1 3572 3UTR 100% 4.950 3.465 N SSPO n/a
6 TRCN0000020996 GCCCACATGTTCTGTGTCAAT pLKO.1 1665 3UTR 100% 4.950 3.465 N SSPO n/a
7 TRCN0000020997 GCATTTCAGATTTGAGGCAAA pLKO.1 1915 3UTR 100% 4.050 2.835 N SSPO n/a
8 TRCN0000020994 CCATGATAAATCATCTCGGTT pLKO.1 2561 3UTR 100% 2.640 1.848 N SSPO n/a
9 TRCN0000020995 GCTGAAGAACATGGAGGTGTT pLKO.1 3902 3UTR 100% 4.050 2.430 N SSPO n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001744852.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.