Transcript: Human XR_001744892.2

PREDICTED: Homo sapiens bromodomain adjacent to zinc finger domain 1B (BAZ1B), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
BAZ1B (9031)
Length:
3605
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001744892.2
NBCI Gene record:
BAZ1B (9031)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001744892.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000013340 CGATACTTTATACGGCATAAT pLKO.1 878 3UTR 100% 13.200 18.480 N BAZ1B n/a
2 TRCN0000338493 CGATACTTTATACGGCATAAT pLKO_005 878 3UTR 100% 13.200 18.480 N BAZ1B n/a
3 TRCN0000382275 ATAAGCTGCACACTAACTTTC pLKO_005 1245 3UTR 100% 10.800 15.120 N BAZ1B n/a
4 TRCN0000369483 TCATGCGCAGGACTCCTATTG pLKO_005 2808 3UTR 100% 10.800 15.120 N BAZ1B n/a
5 TRCN0000108939 CGGAAGCCAAATTTGGGTCTA pLKO.1 3301 3UTR 100% 4.050 5.670 N Baz1b n/a
6 TRCN0000380794 AGATGCTCAGTATCCTATTAC pLKO_005 1996 3UTR 100% 13.200 9.240 N BAZ1B n/a
7 TRCN0000379871 GATGAAGTTCCAGGATTATTC pLKO_005 2867 3UTR 100% 13.200 9.240 N BAZ1B n/a
8 TRCN0000380883 CACCTAGGACCTCTAGTAAAC pLKO_005 1497 3UTR 100% 10.800 7.560 N BAZ1B n/a
9 TRCN0000013341 GCAGATGACTTTGTTGGATAT pLKO.1 1426 3UTR 100% 10.800 7.560 N BAZ1B n/a
10 TRCN0000338494 GCAGATGACTTTGTTGGATAT pLKO_005 1426 3UTR 100% 10.800 7.560 N BAZ1B n/a
11 TRCN0000013342 CGGGAAATCCAGGAAAGAGAA pLKO.1 2684 3UTR 100% 4.950 3.465 N BAZ1B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001744892.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.