Transcript: Human XR_001745455.1

PREDICTED: Homo sapiens KH RNA binding domain containing, signal transduction associated 3 (KHDRBS3), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KHDRBS3 (10656)
Length:
1577
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001745455.1
NBCI Gene record:
KHDRBS3 (10656)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001745455.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000154463 GTGGACTAACTCAAGACACAA pLKO.1 1366 3UTR 100% 4.950 6.930 N KHDRBS3 n/a
2 TRCN0000428439 TGGTGCTGATTACTATGATTA pLKO_005 1297 3UTR 100% 13.200 10.560 N KHDRBS3 n/a
3 TRCN0000416794 GTTCCTCATCCCTGATTATAA pLKO_005 865 3UTR 100% 15.000 10.500 N KHDRBS3 n/a
4 TRCN0000420882 TACATCGATGTGGTGATTAAT pLKO_005 539 3UTR 100% 15.000 10.500 N KHDRBS3 n/a
5 TRCN0000435883 GCGCCTGGTGAACCAAGAAAT pLKO_005 478 3UTR 100% 13.200 9.240 N KHDRBS3 n/a
6 TRCN0000155459 GATGGATATGGCACTGCTTAT pLKO.1 1223 3UTR 100% 10.800 7.560 N KHDRBS3 n/a
7 TRCN0000154552 GAAAGGTTCCATGAGAGACAA pLKO.1 703 3UTR 100% 4.950 3.465 N KHDRBS3 n/a
8 TRCN0000156167 CAAGGAAGAAGAGTTGAGGAA pLKO.1 727 3UTR 100% 2.640 1.848 N KHDRBS3 n/a
9 TRCN0000156580 GTGGCAATTCTCTGAAGCGTT pLKO.1 645 3UTR 100% 2.640 1.848 N KHDRBS3 n/a
10 TRCN0000154551 GCTGGGACAGAAAGTGTTAAT pLKO.1 571 3UTR 100% 13.200 7.920 N KHDRBS3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001745455.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.