Transcript: Human XR_001746409.2

PREDICTED: Homo sapiens cell division cycle 14B (CDC14B), transcript variant X21, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CDC14B (8555)
Length:
1790
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001746409.2
NBCI Gene record:
CDC14B (8555)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001746409.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000381974 GTGATAGACTTCGGGCCTTGA pLKO_005 1277 3UTR 100% 4.050 5.670 N CDC14B n/a
2 TRCN0000380135 ACTGATGCCATTGTCAAAGAA pLKO_005 868 3UTR 100% 5.625 3.375 N CDC14B n/a
3 TRCN0000005979 CTCCTGAGACTTATATTCAAT pLKO.1 725 3UTR 100% 5.625 3.375 N CDC14B n/a
4 TRCN0000273454 CTCCTGAGACTTATATTCAAT pLKO_005 725 3UTR 100% 5.625 3.375 N CDC14B n/a
5 TRCN0000273457 CACAATGTTACTACCATTATT pLKO_005 757 3UTR 100% 15.000 7.500 Y CDC14B n/a
6 TRCN0000273455 TTGGATGCTACATGGTTATAT pLKO_005 401 3UTR 100% 15.000 7.500 Y CDC14B n/a
7 TRCN0000005977 CTCTCCATTTCAAGGACTAAA pLKO.1 1754 3UTR 100% 13.200 6.600 Y CDC14B n/a
8 TRCN0000005978 GAGTGCATCAAATGTACATTA pLKO.1 192 3UTR 100% 13.200 6.600 Y CDC14B n/a
9 TRCN0000284982 GGATAATACCAGACCGATTTA pLKO_005 647 3UTR 100% 13.200 6.600 Y CDC14B n/a
10 TRCN0000047130 CTGGTGGATTGTTTGTGACTA pLKO.1 1383 3UTR 100% 4.950 2.475 Y CDC14C n/a
11 TRCN0000047132 TGTGTAGTGTTGTCATCTGGT pLKO.1 1367 3UTR 100% 2.640 1.320 Y CDC14C n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001746409.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.