Transcript: Human XR_001748721.2

PREDICTED: Homo sapiens solute carrier family 11 member 2 (SLC11A2), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC11A2 (4891)
Length:
2042
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001748721.2
NBCI Gene record:
SLC11A2 (4891)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001748721.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000079535 GCCTGAACTCTATCTTCTGAA pLKO.1 1768 3UTR 100% 4.950 3.960 N Slc11a2 n/a
2 TRCN0000043250 CCACCATGACAGGAACCTATT pLKO.1 1272 3UTR 100% 10.800 7.560 N SLC11A2 n/a
3 TRCN0000043252 CGGCCAGTAATGAGTGACTTT pLKO.1 1505 3UTR 100% 4.950 3.465 N SLC11A2 n/a
4 TRCN0000043248 GCTATCAATCTTCTGTCTGTA pLKO.1 626 3UTR 100% 4.950 3.465 N SLC11A2 n/a
5 TRCN0000043251 GCTTTCGTAAACTCTGGGCTT pLKO.1 312 3UTR 100% 2.160 1.512 N SLC11A2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001748721.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.