Transcript: Human XR_001748839.1

PREDICTED: Homo sapiens RAD52 homolog, DNA repair protein (RAD52), transcript variant X14, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RAD52 (5893)
Length:
3528
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001748839.1
NBCI Gene record:
RAD52 (5893)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001748839.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000375250 TACGTGGGAGTCTGTGCATTT pLKO_005 400 3UTR 100% 10.800 15.120 N Rad52 n/a
2 TRCN0000018870 CGGGTAATTAATCTGGCCAAT pLKO.1 298 3UTR 100% 4.050 5.670 N RAD52 n/a
3 TRCN0000271415 ATGAACGTCATTGCGATTTAT pLKO_005 1487 3UTR 100% 15.000 10.500 N RAD52 n/a
4 TRCN0000271350 CAGCTGAAGGATGGTTCATAT pLKO_005 430 3UTR 100% 13.200 9.240 N RAD52 n/a
5 TRCN0000271352 CCTCAAGTCCAAGGCTTTATC pLKO_005 483 3UTR 100% 13.200 9.240 N RAD52 n/a
6 TRCN0000271414 TCTTGGGACCTCCAAACTTAT pLKO_005 1292 3UTR 100% 13.200 9.240 N RAD52 n/a
7 TRCN0000018871 CCACCAGAAACCACAAGCAAA pLKO.1 1264 3UTR 100% 4.950 3.465 N RAD52 n/a
8 TRCN0000018873 GCGAAGAGACAAGATCTTGAA pLKO.1 812 3UTR 100% 4.950 3.465 N RAD52 n/a
9 TRCN0000271351 ACTACCTGAGATCACTAAATA pLKO_005 750 3UTR 100% 15.000 9.000 N RAD52 n/a
10 TRCN0000018872 GCACAACAGGAAACTGGGAAT pLKO.1 1326 3UTR 100% 4.050 2.430 N RAD52 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001748839.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.