Transcript: Human XR_001750531.1

PREDICTED: Homo sapiens telomerase associated protein 1 (TEP1), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TEP1 (7011)
Length:
10717
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001750531.1
NBCI Gene record:
TEP1 (7011)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001750531.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000231544 TTGCCCTTTCCTTCGAATATA pLKO_005 1941 3UTR 100% 15.000 21.000 N TEP1 n/a
2 TRCN0000231543 GTACTGCCATGACGGACAAAT pLKO_005 1273 3UTR 100% 13.200 18.480 N TEP1 n/a
3 TRCN0000221584 CCGATGATACACTCTTTCTTA pLKO.1 5371 3UTR 100% 5.625 7.875 N TEP1 n/a
4 TRCN0000039829 CGACGATATTTCTGTGCCATT pLKO.1 1155 3UTR 100% 4.050 5.670 N TEP1 n/a
5 TRCN0000009840 TAATCCTTACTAGAACCACAA pLKO.1 8179 3UTR 100% 4.050 5.670 N TEP1 n/a
6 TRCN0000231546 ATCCTAGTAGGACCCTAATAT pLKO_005 7439 3UTR 100% 15.000 10.500 N TEP1 n/a
7 TRCN0000231547 GATGTGCCACTCGGGAATAAT pLKO_005 7949 3UTR 100% 15.000 10.500 N TEP1 n/a
8 TRCN0000231545 CTATCTGCGTGGCCAACTAAA pLKO_005 3848 3UTR 100% 13.200 9.240 N TEP1 n/a
9 TRCN0000010359 TAGTGATGCCAGCATGGATAG pLKO.1 7659 3UTR 100% 6.000 4.200 N TEP1 n/a
10 TRCN0000221586 CCTGGAAATCTGACTTTGTTT pLKO.1 3310 3UTR 100% 5.625 3.938 N TEP1 n/a
11 TRCN0000221585 GCCAAAGCAGATTTGAAGTTA pLKO.1 7225 3UTR 100% 5.625 3.938 N TEP1 n/a
12 TRCN0000018330 CAGATATCCTCTCCTTGAAGA pLKO.1 313 3UTR 100% 4.950 3.465 N TEP1 n/a
13 TRCN0000221583 GCCTGTGTTCTCATGTGGATT pLKO.1 8090 3UTR 100% 4.950 2.970 N TEP1 n/a
14 TRCN0000127601 CGCTTGTAATCCCAGCACTTT pLKO.1 8495 3UTR 100% 4.950 2.475 Y CCDC30 n/a
15 TRCN0000155229 GATCAAGACCATCCTGGCTAA pLKO.1 8550 3UTR 100% 4.050 2.025 Y INTS7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001750531.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.