Transcript: Human XR_001751364.2

PREDICTED: Homo sapiens apoptosis and caspase activation inhibitor (AVEN), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
AVEN (57099)
Length:
6789
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001751364.2
NBCI Gene record:
AVEN (57099)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001751364.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000143812 GACCTGAAATCCAAGGAAGAT pLKO.1 1082 3UTR 100% 4.950 3.465 N AVEN n/a
2 TRCN0000145470 GAGAAAGAATGGGATAGTGAA pLKO.1 632 3UTR 100% 4.950 3.465 N AVEN n/a
3 TRCN0000142013 GAGCAACCAAGTACCTCCAAA pLKO.1 1172 3UTR 100% 4.950 3.465 N AVEN n/a
4 TRCN0000122869 GTGGTCCAAGAGGAAGAAGTT pLKO.1 1109 3UTR 100% 4.950 3.465 N AVEN n/a
5 TRCN0000122854 GATGCAGAGACCTATGGAGAA pLKO.1 437 3UTR 100% 4.050 2.835 N AVEN n/a
6 TRCN0000145521 GAAGAACTAGATCTGTTGCTT pLKO.1 1004 3UTR 100% 3.000 2.100 N AVEN n/a
7 TRCN0000143218 GAGGGAGATAACATCTTACCA pLKO.1 1046 3UTR 100% 3.000 2.100 N AVEN n/a
8 TRCN0000143502 GTTGGACAGCATGATTTCCTA pLKO.1 1222 3UTR 100% 3.000 2.100 N AVEN n/a
9 TRCN0000142832 CAAGAGGAAGAAGTTTGTGCA pLKO.1 1115 3UTR 100% 2.640 1.848 N AVEN n/a
10 TRCN0000141963 GAACTGATGATGGCAAGGGAT pLKO.1 807 3UTR 100% 2.640 1.848 N AVEN n/a
11 TRCN0000144981 GAGAATGATGAACAGGGAAAT pLKO.1 458 3UTR 100% 10.800 6.480 N AVEN n/a
12 TRCN0000146346 CCTCAGAATGTGACTGTATTT pLKO.1 3121 3UTR 100% 13.200 6.600 Y VNN1 n/a
13 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 3677 3UTR 100% 13.200 6.600 Y LIAS n/a
14 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 3752 3UTR 100% 4.950 2.475 Y ORAI2 n/a
15 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 2126 3UTR 100% 4.950 2.475 Y ERAP2 n/a
16 TRCN0000164885 GCTGAGGCAGAAGAATCACTT pLKO.1 2289 3UTR 100% 4.950 2.475 Y FAM74A4 n/a
17 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 4620 3UTR 100% 5.625 2.813 Y KLHL30 n/a
18 TRCN0000179120 CAACATGGTGAAACCCTGTTT pLKO.1 3749 3UTR 100% 4.950 2.475 Y LOC339059 n/a
19 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 4620 3UTR 100% 5.625 2.813 Y EID2B n/a
20 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 3841 3UTR 100% 4.950 2.475 Y DCAF11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001751364.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.