Transcript: Human XR_001754419.1

PREDICTED: Homo sapiens solute carrier family 4 member 11 (SLC4A11), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC4A11 (83959)
Length:
3536
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001754419.1
NBCI Gene record:
SLC4A11 (83959)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001754419.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000415148 GGCATTACTTGGACGACTATC pLKO_005 2104 3UTR 100% 10.800 15.120 N SLC4A11 n/a
2 TRCN0000038265 CGAGGATTCAAGCTACTACAA pLKO.1 671 3UTR 100% 4.950 6.930 N SLC4A11 n/a
3 TRCN0000418938 GCCGTCAAGGGCACGGTTAAA pLKO_005 2061 3UTR 100% 4.400 6.160 N SLC4A11 n/a
4 TRCN0000038266 CGGACACATCTATGACACGAT pLKO.1 2718 3UTR 100% 2.640 3.696 N SLC4A11 n/a
5 TRCN0000428654 GTTTCTTCCTTGCGCTTTATG pLKO_005 1948 3UTR 100% 13.200 10.560 N SLC4A11 n/a
6 TRCN0000038268 GCGCTCTACATCCAGGTGATT pLKO.1 1860 3UTR 100% 4.950 3.960 N SLC4A11 n/a
7 TRCN0000038267 CCCGAAAGTACCTGAAGTTAA pLKO.1 877 3UTR 100% 13.200 9.240 N SLC4A11 n/a
8 TRCN0000038264 CCCTACATGAAGATGATCTTT pLKO.1 3049 3UTR 100% 5.625 3.938 N SLC4A11 n/a
9 TRCN0000421782 GACTTCACTGATGGCATTATT pLKO_005 1623 3UTR 100% 15.000 9.000 N SLC4A11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001754419.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.