Transcript: Mouse XR_001780470.1

PREDICTED: Mus musculus Ral GTPase activating protein, alpha subunit 1 (Ralgapa1), transcript variant X6, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ralgapa1 (56784)
Length:
8549
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001780470.1
NBCI Gene record:
Ralgapa1 (56784)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001780470.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000350064 GTAGATTATGATCCGTTTATG pLKO_005 5321 3UTR 100% 13.200 18.480 N Ralgapa1 n/a
2 TRCN0000088159 CCAGCCTAACTACGCTTCATT pLKO.1 3816 3UTR 100% 5.625 7.875 N Ralgapa1 n/a
3 TRCN0000317534 CCAGCCTAACTACGCTTCATT pLKO_005 3816 3UTR 100% 5.625 7.875 N Ralgapa1 n/a
4 TRCN0000088162 CCTCGGACTTTAGATAATCTT pLKO.1 1307 3UTR 100% 5.625 7.875 N Ralgapa1 n/a
5 TRCN0000317532 CCTCGGACTTTAGATAATCTT pLKO_005 1307 3UTR 100% 5.625 7.875 N Ralgapa1 n/a
6 TRCN0000088158 GCCTCATTACAACTTTATGAT pLKO.1 7653 3UTR 100% 5.625 7.875 N Ralgapa1 n/a
7 TRCN0000317535 GCCTCATTACAACTTTATGAT pLKO_005 7653 3UTR 100% 5.625 7.875 N Ralgapa1 n/a
8 TRCN0000088160 CCTGGATCAAAGCAAATCTAA pLKO.1 2685 3UTR 100% 5.625 3.938 N Ralgapa1 n/a
9 TRCN0000317605 CCTGGATCAAAGCAAATCTAA pLKO_005 2685 3UTR 100% 5.625 3.938 N Ralgapa1 n/a
10 TRCN0000088161 CCTCATTGTAATATACCCAAT pLKO.1 6823 3UTR 100% 4.050 2.835 N Ralgapa1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001780470.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.