Transcript: Mouse XR_001780497.1

PREDICTED: Mus musculus centrosomal protein 128 (Cep128), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cep128 (75216)
Length:
4969
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001780497.1
NBCI Gene record:
Cep128 (75216)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001780497.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000241432 CCGAGCAGATCTCGCTAATAA pLKO_005 2401 3UTR 100% 15.000 21.000 N Cep128 n/a
2 TRCN0000217571 GCGACTTCACTTGAGTATTTC pLKO.1 3942 3UTR 100% 13.200 18.480 N Cep128 n/a
3 TRCN0000241430 GCGACTTCACTTGAGTATTTC pLKO_005 3942 3UTR 100% 13.200 18.480 N Cep128 n/a
4 TRCN0000241431 TCACACTCCTTGCCAGTATTT pLKO_005 3795 3UTR 100% 13.200 18.480 N Cep128 n/a
5 TRCN0000190781 GCGACAAAGTGAAACCGAGAA pLKO.1 1294 3UTR 100% 4.050 5.670 N Cep128 n/a
6 TRCN0000241429 ATGAGAATGAGGACGTAATAA pLKO_005 1263 3UTR 100% 15.000 10.500 N Cep128 n/a
7 TRCN0000241433 AGGATTTGGAGCAGTCAATAA pLKO_005 717 3UTR 100% 13.200 9.240 N Cep128 n/a
8 TRCN0000192531 GCAGGAAATAGAACGAGAGAT pLKO.1 1144 3UTR 100% 4.950 3.465 N Cep128 n/a
9 TRCN0000191955 GTTAGAAGAATTGACTGGGAA pLKO.1 1069 3UTR 100% 2.640 1.848 N Cep128 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001780497.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.