Transcript: Mouse XR_001781117.1

PREDICTED: Mus musculus ELKS/RAB6-interacting/CAST family member 2 (Erc2), transcript variant X34, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Erc2 (238988)
Length:
6413
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001781117.1
NBCI Gene record:
Erc2 (238988)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001781117.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000176742 CCGTGATATGAAAGATATGTT pLKO.1 1926 3UTR 100% 5.625 7.875 N Erc2 n/a
2 TRCN0000197515 CGATCTTACAAGCATATCATT pLKO.1 5567 3UTR 100% 5.625 7.875 N Erc2 n/a
3 TRCN0000426205 GAGAATATCCAGTCCCTTAAT pLKO_005 484 3UTR 100% 13.200 10.560 N Erc2 n/a
4 TRCN0000200171 CCCTTAATGCAGCCTATGCTA pLKO.1 497 3UTR 100% 3.000 2.400 N Erc2 n/a
5 TRCN0000427979 ACAAACTGGAGGCACAATTAA pLKO_005 2381 3UTR 100% 15.000 10.500 N Erc2 n/a
6 TRCN0000421973 CACATTGAACAACGGTATTAT pLKO_005 4057 3UTR 100% 15.000 10.500 N Erc2 n/a
7 TRCN0000420568 GCCCGAGACGAGTCCATTAAA pLKO_005 1243 3UTR 100% 15.000 10.500 N Erc2 n/a
8 TRCN0000432160 GCAGTATCCTGATAATCTATT pLKO_005 3519 3UTR 100% 13.200 9.240 N Erc2 n/a
9 TRCN0000177263 GCTTCATTCTTGTCAGTAAAT pLKO.1 5120 3UTR 100% 13.200 9.240 N Erc2 n/a
10 TRCN0000217523 GATGAAGACCATCACCATTAC pLKO.1 3094 3UTR 100% 10.800 7.560 N Erc2 n/a
11 TRCN0000197514 CAGAACTTCTTGCCTTACAAA pLKO.1 1688 3UTR 100% 5.625 3.938 N Erc2 n/a
12 TRCN0000176647 CCTCTAAATGAAAGGTCACTT pLKO.1 4420 3UTR 100% 4.950 3.465 N Erc2 n/a
13 TRCN0000147349 GCCTTACAAACAAAGCTTGAA pLKO.1 1699 3UTR 100% 4.950 2.970 N ERC2 n/a
14 TRCN0000182477 GCCAACCTCAAGTACAACCAA pLKO.1 2641 3UTR 100% 3.000 1.800 N Erc2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001781117.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.