Transcript: Mouse XR_001782566.1

PREDICTED: Mus musculus sphingomyelin synthase 1 (Sgms1), transcript variant X10, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Sgms1 (208449)
Length:
3528
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001782566.1
NBCI Gene record:
Sgms1 (208449)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001782566.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000340409 CACCTTAGTAGGCAAGTTAAA pLKO_005 1866 3UTR 100% 13.200 18.480 N Sgms1 n/a
2 TRCN0000340334 CTGTACCTGTATCGGTGTATT pLKO_005 1335 3UTR 100% 13.200 18.480 N Sgms1 n/a
3 TRCN0000422754 CTGTACCTGTATCGGTGTATT pLKO_005 1335 3UTR 100% 13.200 18.480 N SGMS1 n/a
4 TRCN0000351060 TTACCTTGACTTAACCTATTG pLKO_005 2013 3UTR 100% 10.800 15.120 N Sgms1 n/a
5 TRCN0000134521 GCGTTGGACAACAATAAAGAA pLKO.1 2082 3UTR 100% 5.625 7.875 N SGMS1 n/a
6 TRCN0000124041 GCCAGGACTTAATCAACCTAA pLKO.1 691 3UTR 100% 4.950 6.930 N Sgms1 n/a
7 TRCN0000124043 CGGTGTATTACAATGTATGTA pLKO.1 1347 3UTR 100% 5.625 4.500 N Sgms1 n/a
8 TRCN0000340411 TAACGCTCACCTACCTATTTA pLKO_005 1537 3UTR 100% 15.000 10.500 N Sgms1 n/a
9 TRCN0000124042 CCACCTTAGTAGGCAAGTTAA pLKO.1 1865 3UTR 100% 13.200 9.240 N Sgms1 n/a
10 TRCN0000340332 TTGTAGGACTCTGGCTATTTC pLKO_005 1174 3UTR 100% 13.200 9.240 N Sgms1 n/a
11 TRCN0000124040 CGGAGAATAATGAAGCTCATT pLKO.1 1440 3UTR 100% 4.950 3.465 N Sgms1 n/a
12 TRCN0000124039 GCTGAGATTATGCCATCTGTT pLKO.1 2877 3UTR 100% 4.950 3.465 N Sgms1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001782566.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.