Transcript: Mouse XR_001784132.1

PREDICTED: Mus musculus ciliary rootlet coiled-coil, rootletin (Crocc), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Crocc (230872)
Length:
5952
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001784132.1
NBCI Gene record:
Crocc (230872)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001784132.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000181354 CCAGGACAAGCTGGAATTAAA pLKO.1 2960 3UTR 100% 15.000 10.500 N Crocc n/a
2 TRCN0000250754 CCAGGACAAGCTGGAATTAAA pLKO_005 2960 3UTR 100% 15.000 10.500 N Crocc n/a
3 TRCN0000250753 AGCTGGCCATCAAGTACAATG pLKO_005 1033 3UTR 100% 10.800 7.560 N Crocc n/a
4 TRCN0000258081 TACGGCAGAGGTTGCTGAAAG pLKO_005 4693 3UTR 100% 10.800 7.560 N Crocc n/a
5 TRCN0000178200 CATCAAGTACAATGCTGTCAA pLKO.1 1040 3UTR 100% 4.950 3.465 N Crocc n/a
6 TRCN0000182152 CAGTACAAGAAGCAGTGCTCA pLKO.1 1260 3UTR 100% 2.640 1.848 N Crocc n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001784132.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.